Gene detail

Gene detail information of Glyur000413s00015469

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G30330.1	auxin response factor 6
NR	XP_004485979.1	PREDICTED: auxin response factor 6-like [Cicer arietinum]
Swissprot	tr\|Q6H6V4\|ARFF_ORYSJ	Auxin response factor 6
trEMBL	tr\|G7IP35\|G7IP35_MEDTR	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000413s00015469.1
TCTGAGTTCTCTCTCTCCCTTGAAAAAATGTGACACTCGTACACACTCTCTTTCTCCCTCTTAAAAGGACACCCCAAAAATGATGGCGGTTGTGTTCTGATTGATTGGAGCTGAGAGAATAGAGAGAGAGAATAGAGAGAAAAAGGGGGTAAAGCAACAGTGGCATGGCCAACAAGTTACTGGTAGAGTGGTAGTAGTAGTAGTAGTAGCGCCATAACCACAATCACCACCACAAGCAGAAAAAACACTGCTTCCCATTTTTCTATTACTGGAAGAAAATGAGCCAAGCTCAAACTTTATTTTGTACTCGTCAGCCACCCCTGTTGTTGTTTTTTTGGTGTCCCTCCATTAAAATATACAAACTTGAAACTACAACTTCAACTTCAACTTCAACTTGATCCCTTGACACTCTCTCTCTTGTTGCTTCCATTTGCTCTCTTTTTCTGGGTTTGTGAGATCCGCTCTCTCTTCTCGGCGTCACTCTTCTCTTGCTGAGATCTGTTTCCTTTTCAAGCTTTTCCTTTCCCCTTTGTTAAGCTTCTTCTGGNTCTTGTTGGTCTTTCAGATTGTTACTAAATTTGGTTGTGAGAAGCCCACATATACTTGAGCTCAGGTTCTGGAATATTTTGTGTGTGCAATGAAGCCTTTGGTTGAAGACATGAACTTGGGGTGTTGGGGGTTGAGGAAGACGAGAAGCGAATGAGGCATAAAGCAGTTGTCTTTTGCTGTGATACTGGTTTTGGTTGAGGATTGGAGGGTGGGGGGAGGTGGGGAATCTTTGTGGGTTATGTTTAGATTTGAATGNGTTTTGGTTGGTGAAGGAGAGTGGAAGGATAACAAAGAGTGATATTCTGCAGTGGAAAGGAAGAGACCAAAAGGCTTGTTTTGTGGTTGTGGGGGTGTCATTTTCTCAGAAATTTTGTTGCTTAATTGGTCTACTTAGAGAATAGTTTTTTCATTGTGGGCTCAATTTTGAGTTTGCGAATTGCTCAAATCTTTTGCTCAAATGAGACTTTCTTCAGCTGGTTTTAGCCCTCCACCCCAGGAAGGGGAAAAGCGAGTCCTAGACTCAGAACTTTGGCATGCATGTGCCGGCCCCCTTGTCTCCTTACCAGCAGTTGGAAGTCGAGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCAACCAACAAGGAAGTGGATGCTCATATCCCAAACTACCCGAGCTTACCTCCTCAACTCATATGTCAACTTCATAATTTGACTATGCATGCTGATGTGGAGACCGATGAAGTGTATGCACAGATGACCTTGCAGCCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGATACAAGTACTCATGGGGGATTCTCTGTGCCTCGCCGGGCGGCTGAAAAAGTGTTTCCTCCATTGGACTTCTCCCAACAACCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAACCCAAACGACATCTACTTACTACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGCAACACATCTTCTTCAATAGGAATGAAAAGAACCAATTGCTTCTTGGCATCCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCATCGGTGCTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCGGCTGCAACAAATAAATTTGTCATACCCTTAGTGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAGGAGTCTAGTGTGCGACGATATATGGGTACAATAACTGGCATTAGTGACCTGGATCCTTCCCGATGGCCGAATTCACATTGGCGCTCGGTGAAGGTTGGGTGGGATGAATCCACTGCAGGGGAGAGACAACCTAGAGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCCCCATTTCCCCTTAGGCTTAAACGACCGTGGCCTCCAGGATTGCCTTCATTCCATGGCATGAAGGATGACGATTTTGGCATAAATTCTCCCTTGTTGTGGCTTCGAGACACCGACAGAGGGCTTCAATCTCTTAATTTTCAGGGAATTGGGGTTAATCCTTGGATGCAGCCAAGGTTTGATCCCGCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCACTTCAGGACATGAGGAGTGTAGATCCTTCCAAACAGCATCCATCCTTACTTCAACAATTTCAGCAACCACAGAACTTCCCAAACAGGACTGCTGCTTTAATGCAGGCCCAGATGTTGCAACAATCACAATCACAACCTCAACAGCCACAAACTCAGACTCATCTTCAGCAGCATTTGCAGCATCAGCACTCTTTCAATAGTCAGCACCATCATCATAACCAGCAGCAGCAACAGCAGCAACAACAAACTCAACAGCAAGTGGTGGATAATCAGCAGATTTCTAGTGCAGTCTCTACGATGTCTCAGTTTGTTTCAGCACCTCCACCTCAATCACCACCTATGCAAGCTCTCTCTTCACTTTGCCAACAGCAAAGCTTCTCCGATTCAAATGTGAATTCTACGACGACTAATGTTTCTCCCCTGCACAGTATCTTGGGTTCGTTTCCCCAGGATGAAACATCTCACCTTCTGAATCTTCCTAGAACAAGCTCTTGGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGTGCATCTCAATGTGTTCTGCCTCAGGTGGAGCAGTTAGGGCAGCCACAGAGTACCATATCTCAGAATGCTATTACATTGCCACCATTTCCTGGTAAGGAGTGCTCAATAGACCAAGAAGGAAGCAATGATCCACAAAGCAATCTTTTATTTGGTGGGATCGGCACCAACAGTGACCCCTCAACCATGCCCTATCATCAATCTTCTAATTATCTGAATACCACAGGCACTGATTCTTCATTGAATCATGGAGTAACACACAGCATTGGTGAATCGGGCTTCTTGCATACGCCGGATAATGTGGGGCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTTGGAAGATCATTGGACATCACTAAATTTAGCAGCTACCATGAGCTGCGTTCTGAGCTCGCCCGAATGTTTGGGCTGGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGACGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTGAACAGTGTGTGGTGCATCAAGATACTTTCACCTGAGGAAGTTCAGCAGATGGGCAACACCGGCCTCGGGCTTTTGAACTCTGTTCCAATTCAAAGGCTCTCAAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGGATAACAGCTGTGGGGTCTCTAGACTATTGAAAGCATGTGACTGTTAATTTGTATGCATTTCTTCTCATGTAGTAATATCACCCTTTGCTTCCCAACACTTTGCCAATGGTGGTGGGAAGTTCTTTGCCTAAATGTAGTTTATAGCCTACTCTCTAGCCTTTTGTTTTTTATTTTCTTGTTTTTCATGCTAGGAGACCATTCATAAACTAATACTGTAATTATATGGTCATTGTGCTAGCTACAATATATACAATACTTAATCCATTAGGAAATCAATGAATGTGTGAAGATAGTTTCTCTCTATAAGGAACTTTACTATTTAGTCTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00413	84510	91552	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000413s00015469.1	PF02362.16	B3	127	235	8.90E-21
Glyur000413s00015469.1	PF06507.8	Auxin_resp	265	329	1.00E-23
Glyur000413s00015469.1	PF02309.11	AUX_IAA	719	812	9.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.635
SRR1783600	control	34.490
SRR1783602	moderate drought stress	27.894
SRR1811619	moderate drought stress	27.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.248
DRR006520	Root Summer glycyrrhizin high producing strain	29.088
DRR006521	Root Winter glycyrrhizin high producing strain	10.346
DRR006522	Root Winter glycyrrhizin high producing strain	10.143
DRR006523	Root Summer glycyrrhizin low producing strain	29.100
DRR006524	Root Summer glycyrrhizin low producing strain	29.311
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.747

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.269
SRR2868004	Drought Stress (root)	26.890
SRR2967015	Control (root)	31.606

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.957
SRR9715740	Leaf	34.374
SRR9715741	Leaf	29.393
SRR9715739	Root	16.955
SRR9715742	Root	22.759
SRR9715743	Root	20.505

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.572
SRR8749028	MeJA induced 9h	22.344
SRR8749029	MeJA induced 9h	16.274
SRR8749030	Uninduced	3.161
SRR8749031	Uninduced	1.289
SRR8749032	Uninduced	2.947

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.499
SRR8400027	Control - Root	74.672