Gene detail information of Glyur000413s00015462 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30360.1 | 0 | Early-responsive to dehydration stress protein (ERD4) |
| NR | XP_003593877.1 | 0 | Early-responsive to dehydration [Medicago truncatula] |
| Swissprot | tr|Q9C8G5|CSCLD_ARATH | 0 | CSC1-like protein ERD4 |
| trEMBL | tr|G7IP43|G7IP43_MEDTR | 0 | Early-responsive to dehydration stress protein (ERD4) {ECO:0000313|EMBL:AES64128.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00413 | 41939 | 47406 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000413s00015462.1 | PF13967.1 | RSN1_TM | 5 | 164 | 5.50E-34 |
| Glyur000413s00015462.1 | PF14703.1 | DUF4463 | 224 | 292 | 2.50E-12 |
| Glyur000413s00015462.1 | PF02714.10 | DUF221 | 313 | 635 | 1.60E-93 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.057 |
| SRR1783600 | control | 10.107 |
| SRR1783602 | moderate drought stress | 8.274 |
| SRR1811619 | moderate drought stress | 8.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.348 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.044 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 125.893 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 122.876 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.561 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.737 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 68.521 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 68.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.209 |
| SRR2868004 | Drought Stress (root) | 11.522 |
| SRR2967015 | Control (root) | 18.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 74.777 |
| SRR9715740 | Leaf | 50.445 |
| SRR9715741 | Leaf | 45.761 |
| SRR9715739 | Root | 10.847 |
| SRR9715742 | Root | 24.363 |
| SRR9715743 | Root | 23.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.003 |
| SRR8749028 | MeJA induced 9h | 1.659 |
| SRR8749029 | MeJA induced 9h | 2.061 |
| SRR8749030 | Uninduced | 0.191 |
| SRR8749031 | Uninduced | 0.058 |
| SRR8749032 | Uninduced | 0.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.101 |
| SRR8400027 | Control - Root | 29.305 |