Gene detail

Gene detail information of Glyur000413s00015458

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43330.1	1.00E-118	inositol transporter 1
NR	KHG22280.1	0	putative inositol transporter 1 -like protein [Gossypium arboreum]
COG	YP_004290515.1	4.00E-80	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q8VZR6\|INT1_ARATH	2.00E-147	Inositol transporter 1
trEMBL	tr\|W9RT64\|W9RT64_9ROSA	0	Putative inositol transporter 1 {ECO:0000313\|EMBL:EXB68669.1}

Sequence

Transcript Sequence

>Glyur000413s00015458.1
ATGGTGCAGACGAATTCGCATACGAATAGGATGACGATGGAGGCGACGCCGGGAAGCTCAGACTACTTGGAAATGTATCCGGAGAGGAAAATATCGTTTTTCAAGAATCCCTATATTCTCGGNGTCACCGCTGCTGCTGGCATTGGTGGACTCCTCTTCGGCTACGATACAGGTGTTATATCTGGGGCCCTTCTNTATATTAAAGATGATTTTGAGGTTGTCCGGAGAAGTAGCTTCCTTCAGGAAACAATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGTTTTTGGACGTAAGAAGGCCACCCTTAGTGCTGATGTTGTATTTACTCTTGGATCAGTTGTTATGGCTGCTGCACCAGATGCATATGTTCTCATATTTGGCCGTCTTCTTGTTGGCCTTGGTGTGGGTGCAGCTTCTGTCACTGCCCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCACTAGTAAGCACAAACGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCATAAATCTTGCCTTTACCGAGGTTAGGCCTGTCTTGCTTTGCTCTTTAAATATCCCAGCCATGCTGACACTGCTTGACATTCAACTTGATTTGAAGGGGCAACACCATCATCAAGATATAAATTGGGGCAGCATCATTGAAGGAACTTCTTGTATGTCAACTGTCAAGCTCATTAAAGTACGTGACAGCACATCATTGGATGAGAGTAAATCGCCTAAGGGAGTTCTAATAAAGCAGGTTCCTGGGACATGGCGATGGATGCTTGGAGTTGCTACTTTGCCAGCTATTATTCAGTTTTCTGTCATGCTTTGCCTGCCTGAGTCTCCAAGGTGGCTTTTCCTGAAGAATAGGAAAGACGAAGCTATTTCTGTGCTTTCTAATATCTATAATTATGAACGCCTAGAAGATGAAGTCAATTACCTCTCAGCTCTTTCTGAGCAAGAACTTCAGAAACGGGAGAGCGTTAGATACATGGATGTTTTCAGATCAAAGGAAATCAGAATTGCATTTTTTGTTGGGGCCGGACTTCAGGCTTTTCAGCAGTTCACCGGTATCAGCATAGTCATGTACTACAGCCCCACAATCATTCAAATGGCTGGGTTTAATTCCAATCAGTTAGCTCTTCTTCTGTCCCTCATTGTTGCTGCCATGAATGCTGCTGGAACAATTCTTGGCATTTATCTAATTGACCATGCAGGGCGAAGGAAGTTGGCCCTCACAAGCTTGTCAGGTGCAATTGTTGCTCTGGCAATCCTTTCTACAGGATCTTACCTAGAATCGTCTGACCCTACAAATAGAACCTTTGGGTGGATAGCAATTATCGGGTTAGCCCTGTATATTCTATTTTTTGCTCCAGGAATGGGACCAGTGCCATGGACTGTGAACTCAGAAATCTACCCTGAAGAATTCCGTGGTGTATGTGGGGGCATGTCAGCCACTGTGAACTGGATTTGCAGTGTGATAATGTCTGAGAGCTTTCTTTCAATTTCTGACGCCGTGGGCCTTGGTGGGAGTTTCGTGATTCTTGGTGTTATATGTGTGGTTGCTTTTTTCTTTGTGCTCTTGTTTGTGCCAGAGACAAAAGGATTGACATTTGAAGAAGTGGCACTCATATGGAAGAGGAGAGCTTGGGGTAAACATTATGACACACAGAACCTTCTCGAGAGAGGAAACCAGCCCTAGGTGTCTTAATTGTGAGCTGCAGCATTATGTGACGGGAGATAGGAAACCAGTCGTAGTCATTTGAGTTGTTAGCTGCGCCTGCCACATTATGGGATAGTAGTGGTAGCTTTGCTGTGATCCTATGCCGTGGATTTTTATCTTTACNAAGGGATCATTGGGATGATTGGTATGTTGGACCATCCAAAAGCTTTTTGGGAGAACTACCATTCAGGAAACTTTGCAAACTTATCTTCGATATAAGAATTAATCGAACACCTAGGATTTGTTTAAAGATAGAATTTGTNTTAGCTAATAGGAAAATGGTGTAGACTTGTGACTCTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00413	33137	38475	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000413s00015458.1	PF00083.19	Sugar_tr	44	196	9.50E-40
Glyur000413s00015458.1	PF00083.19	Sugar_tr	268	558	1.00E-72
Glyur000413s00015458.2	PF00083.19	Sugar_tr	44	514	8.90E-115
Glyur000413s00015458.3	PF00083.19	Sugar_tr	44	486	2.00E-117

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.370
SRR1783600	control	6.722
SRR1783602	moderate drought stress	11.077
SRR1811619	moderate drought stress	11.375

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.506
DRR006520	Root Summer glycyrrhizin high producing strain	5.494
DRR006521	Root Winter glycyrrhizin high producing strain	13.532
DRR006522	Root Winter glycyrrhizin high producing strain	12.960
DRR006523	Root Summer glycyrrhizin low producing strain	7.396
DRR006524	Root Summer glycyrrhizin low producing strain	7.491
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.956
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.812

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.817
SRR2868004	Drought Stress (root)	13.185
SRR2967015	Control (root)	13.851

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.764
SRR9715740	Leaf	33.579
SRR9715741	Leaf	53.054
SRR9715739	Root	1.064
SRR9715742	Root	5.518
SRR9715743	Root	4.245

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.586
SRR8749028	MeJA induced 9h	6.279
SRR8749029	MeJA induced 9h	4.686
SRR8749030	Uninduced	2.859
SRR8749031	Uninduced	2.070
SRR8749032	Uninduced	2.641

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.498
SRR8400027	Control - Root	15.280