Gene detail information of Glyur000412s00023308 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15520.1 | 8.00E-161 | pleiotropic drug resistance 12 |
| NR | XP_010102805.1 | 0 | Pleiotropic drug resistance protein 1 [Morus notabilis] |
| COG | YP_004055815.1 | 5.00E-32 | ABC transporter [Marivirga tractuosa DSM 4126] |
| Swissprot | tr|Q76CU2|PDR1_TOBAC | 0 | Pleiotropic drug resistance protein 1 |
| trEMBL | tr|W9RJM3|W9RJM3_9ROSA | 0 | Pleiotropic drug resistance protein 1 {ECO:0000313|EMBL:EXB94133.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00412 | 138316 | 141765 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000412s00023308.1 | PF08370.6 | PDR_assoc | 1 | 30 | 6.00E-07 |
| Glyur000412s00023308.1 | PF00005.22 | ABC_tran | 107 | 259 | 3.10E-20 |
| Glyur000412s00023308.1 | PF01061.19 | ABC2_membrane | 374 | 494 | 7.30E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.676 |
| SRR1783600 | control | 0.672 |
| SRR1783602 | moderate drought stress | 5.137 |
| SRR1811619 | moderate drought stress | 4.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.111 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.176 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.202 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.208 |
| SRR2868004 | Drought Stress (root) | 0.256 |
| SRR2967015 | Control (root) | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.910 |
| SRR9715740 | Leaf | 11.799 |
| SRR9715741 | Leaf | 10.680 |
| SRR9715739 | Root | 0.930 |
| SRR9715742 | Root | 0.717 |
| SRR9715743 | Root | 0.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.959 |
| SRR8749028 | MeJA induced 9h | 0.604 |
| SRR8749029 | MeJA induced 9h | 0.324 |
| SRR8749030 | Uninduced | 0.200 |
| SRR8749031 | Uninduced | 0.062 |
| SRR8749032 | Uninduced | 0.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.267 |
| SRR8400027 | Control - Root | 9.306 |