Gene detail

Gene detail information of Glyur000412s00023307

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15520.1	0	pleiotropic drug resistance 12
NR	XP_003528365.1	0	PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max]
COG	YP_001516786.1	1.00E-16	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q8GU92\|PDR2_ORYSJ	0	Probable pleiotropic drug resistance protein 2
trEMBL	tr\|I1KH54\|I1KH54_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G03780.1}

Sequence

Transcript Sequence

>Glyur000412s00023307.1
ATGGTGGTGTGGGGTTTAGGGAAGAAGAACAAGAGGAAAGTGAAGAAATGGAAAAGAAGAAGTGAGAAATGGGGGTGGGGTCGATGGGTATCTGGGAGAGTGACTTATAATGGACATGGAATGAACGAGTTCGTACCTCAGAGAACCGCTGCCTATATTCACCAACACGATGTTCACATTGCAGAAATGACTGTGAGGGAAACCTTGGATTTCTCAGCAAGGTGCCAAGGGGTTGGATCACGCACAGACTTGCTAGCTGAGTTGTCTAGAAGAGAAAAAGAAGCACAGATTAGACCAGACCCGGATATAGATGTCTACATGAAGGCAACTTCAACTGCAGGCCAGGAGGCAAGTCTGATAACAGATTATGTGATGAGGATCATAGGGTTGGATATATGTGCTGACACTTTGGTGGGGGATGAAATGTTGCGTGGTATCTCTGGAGGACAAAGAAAGCGAGTTACCACCGGGGAGATGCTGGTTGGACCGGCAAATGCTCTATTCATGGATGAAATATCCACTGGCTTGGACAGTTCCACCACTTTCCAAATTGTGAGATCTCTCAGGAACTATGTTCACATTTTTGATGGAACCGTGGTTATCTCTTTGCTCCAGCCAGCACCTGAGACTTATGATCTTTTCGATGACATTATTCTTTTATCTGATGGTCAAATTGTCTACCAAGGACCCCGCGAATACGTTCTTGACTTTTTTGAATCCATGGGTTTTAAATGTCCAGAGAGGAAAGGCGTTGCTGACTTCCTTCAAGAAGATCAAGAGCAGTATTGGATGCACAAAGATGAACCGTACAAGTTTGTAACTGTTACTCAATTTGCTGAGGCATTTCAGTCATTCCATGTTGGGAGGAGAATTGGAGAAGAGCTTGCAATTCCATTTGACAAGTCTAATAATCACCCAGCTGCATTAACCACTAAAAAGTATGGTGTTAACAAGAAGGAACTTCTAAAGGCTAACTTCTCAAGAGAGTATTTACTTATGAAAAGGAATTTATTCGTTTACATCTTCAAGGGGTGTCAGCTTACCGTAATGGCAGTAATTACCATGACACTCTTTCTACGAACTAAGATGCACCGAGATTCCGTGAGTAATGGAGGTCACTATGTTAGTGCTCTATTTTTCTCATTAATAATGCTTATGTTTAATGGAACTGTTGAGCTTTCAATGCTCATCGTAAAGCTTCCTTCTTTCTACAAGCAACGAGACCTTCTATTTTTCCCCACATGGACATATGTCATACCAACATGGGTCCTCAAAATTCCTGTTACATTAGTGGAAGCTGCTATTTGGGTATTTCTCACCTACTATGTCATTGGATTTGATCCAAATGTTGGGAGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00412	135487	137633	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000412s00023307.1	PF00005.22	ABC_tran	29	172	4.00E-05
Glyur000412s00023307.1	PF01061.19	ABC2_membrane	321	449	1.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.546
SRR1783600	control	0.536
SRR1783602	moderate drought stress	2.282
SRR1811619	moderate drought stress	2.221

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.081
DRR006522	Root Winter glycyrrhizin high producing strain	0.079
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.514
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.500

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.151
SRR2868004	Drought Stress (root)	0.078
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.929
SRR9715740	Leaf	4.670
SRR9715741	Leaf	3.515
SRR9715739	Root	0.847
SRR9715742	Root	0.332
SRR9715743	Root	0.674

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.203
SRR8749028	MeJA induced 9h	0.078
SRR8749029	MeJA induced 9h	0.045
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.220
SRR8749032	Uninduced	0.171

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.446
SRR8400027	Control - Root	6.511