Gene detail

Gene detail information of Glyur000412s00023294

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G15510.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	KEH28739.1	pentatricopeptide (PPR) repeat protein [Medicago truncatula]
Swissprot	tr\|Q9M9E2\|PPR45_ARATH	Pentatricopeptide repeat-containing protein At1g15510, chloroplastic (Precursor)
trEMBL	tr\|A0A072UG65\|A0A072UG65_MEDTR	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:KEH28739.1}

Sequence

Transcript Sequence

>Glyur000412s00023294.1
ATGGCGGCGTTTGCTAAACCCTCACAACTCCATGCTCCTCAAAGGGACCACCCCATTGTTCCAAACGGTTCCAGAACCTCAAAGCTCAAAACTTTCACCCATAACTTGAAGAAAACCCTCCACCCCCCACTTAGAAACTATAAACTTTTTTGGGCCACAAGTTCTATCACCGCCACCACCACCACCACCATTAACAGCCACAACAACCCAAACTCTGATATTTATCAACTATGCCTTATTGGGAACTTGGACCGTGCTATGAGCTACTTAGANTCCATGCACGAGCTTCAAGTTCCTGTTGAAGAAGATGCTTACGTTGCTTTAGTTAAGCTTTGTGAGTGGAAGAGAGCAAGGAAGGAAGGTTCTAGAGTTTACTCCTATATTGTTTCCAAGTCTATGATGAGGANCACCCATTTGAGCCTTCAACTTGGGAACGCCCTTTTGAGCATGTTTGTGAGGTTTGGGAACTTGGTGGATGCTTGGTATGTGTTTGGGAGAATGGTTGAGAGGAATGTGTTCTCTTGGAATGTTTTGNTTGGTGGGTATGCCAAAGCTGGGTTCTTTGATGAGGCATTGGATCTCTATCAGAGGATGCTTTGGGTTGGTGATGTGAATTTGAGGCCTGATGTTTACACTTTCCCTTATTTGATGACCATGACCAGTGTGATCATCGCGTGTGAGCTCATGGGCGATGAGAGGTTGGGGAGGGAGGTTCATGGTTATGTTATGAGAACCGTGTTCTGGAGAGATGCTTCGGTTTATAATTCNTTGATTCAGATGTACTCGTCTGTTGGATTTATAGAGGAGGCCGAGAAAGTTTTTACTTGGACGGAGTGTAGGGATGTGGTGTCATGGACTGCAATGATATCGGGTTACGAGAACAATNTGATGCCTCGGAAGGCTGTTGAGACGTATGAAATGATGGAAGCAGAAGGTATCATGCCAGATGAAATCACCGTGGCCGTTGTGCTATCTGCTTGTTCTTGTTTATGCCATTTGGATATGGGGATGAGCCTNCATGAGATGGCCAAGAAGACAGGGCTCATCTCTTATGTTATAGTTGCAAACACACTCATTGACATGTATGCTAAGTGTAAATGCATTGACAGGGCTTTGGAAGTTTTCCACTCTATCCGTGACAAGAATGTGATATCTTGGACATCTATCATCCTCGGTCTTAGGATCAACAACCGATGTTTCGAAGCTTTGTTTTTCTTCAGGGAGATGATGCGTAGACTAAAGCCGAATTNTGTTACCTTAGTTTGTGTCCTATCTGCGTGTGCTAGAATAGGAGCTTTGACATGTGGAAAAGAGATCCATGCCTATGCATTGAGAACCGGAGTAAGTTTTGATGGTTTTCTTCCTAATGCAATTTTGGACATGTATGTAAGGTGTGGAAGAATGGAATATGCATGGAAACAGTTTTTCTCAGGTGACCAAGATGTTTCTGCATGGAACATTTTGCTAACGGGATATGCTGAGCGTGGGAAAGGAACACTTGCTACCNAGCTTTTCCGGAGAATGGTAGAATCAAACGTTGATCCTGATGAAATTACATTTGTGTCCATCTTATGTGCTTGCAGCAGATCTGGNATGGTGGAAGAAGGCTTGGAATATTTTAACAGCATGAAATATAAGTACTGTGTTACGCCTAATCTGAAACACTATGCATGCGTAGTTGATTTACTGGGCCGTGCCGGTAAATTGGAGGATGCTTATGGATTCATACAGAAAATGCCAATGAAACCAGACCCAGCAGTTTGGGGAGCCTTATTAAATGCATGCAGGATCCACCGCCNTGTTGAGCTTGGGGAACTTGCTGCTGAGAATATCTTTCAAGATGANACAACAAGTGTTGGCTATTACATTCTTCTGTTGAATCTATATGCCGACAACGGTATGTGGGACAAAGTTGCAGAAGTAAGAAAAGTGATGGGACAGAAAGGGATAATAGTAGATCCTGGATGCAGCTGGGTGGAAGTCAAGGGCACAGTGCATGCTTTTCTCAGNGGTGATAACTTCCACCCTAAAATAAAGGAAATAAATGCACTTTTGGAGAGATTCTATGAGAAAATGAAGGAAGCTGGTATTCAAGGGCCAGAAAGTAGTCATATGGACATAATGGAAGCCTCTAGGGCTGATATATTTTGTGGACACAGTGAGAGACTGGCCGTTGCCTTTGGACTTATTAATTCTGCCCCTGGCATGCCTATTTGGGTAACTAAGAATCTATACATGTGCCAAAGTTGTCACAACACTGTCAAGTTTATCTCTAAGGAGGTTCGCAGAGAGATTTCTGTAAGAGATGCGGAACGGTTTCACCATTTCAAAGGAGGCATCTGCTCTTGCATGGATGAAGGTTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00412	84932	87583	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000412s00023294.1	PF01535.15	PPR	145	172	0.019
Glyur000412s00023294.1	PF01535.15	PPR	173	199	8.60E-06
Glyur000412s00023294.1	PF01535.15	PPR	253	274	0.0015
Glyur000412s00023294.1	PF13041.1	PPR_2	281	328	3.50E-10
Glyur000412s00023294.1	PF01535.15	PPR	356	383	0.00043
Glyur000412s00023294.1	PF01535.15	PPR	384	412	0.031
Glyur000412s00023294.1	PF13041.1	PPR_2	481	528	2.20E-08
Glyur000412s00023294.1	PF01535.15	PPR	556	580	0.83
Glyur000412s00023294.1	PF01535.15	PPR	624	650	0.28
Glyur000412s00023294.1	PF14432.1	DYW_deaminase	658	777	1.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.584
SRR1783600	control	0.500
SRR1783602	moderate drought stress	1.339
SRR1811619	moderate drought stress	1.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.755
DRR006520	Root Summer glycyrrhizin high producing strain	2.437
DRR006521	Root Winter glycyrrhizin high producing strain	2.216
DRR006522	Root Winter glycyrrhizin high producing strain	1.803
DRR006523	Root Summer glycyrrhizin low producing strain	2.590
DRR006524	Root Summer glycyrrhizin low producing strain	2.918
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.144

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.560
SRR2868004	Drought Stress (root)	0.648
SRR2967015	Control (root)	1.097

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.180
SRR9715740	Leaf	6.835
SRR9715741	Leaf	1.516
SRR9715739	Root	0.284
SRR9715742	Root	1.543
SRR9715743	Root	0.768

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.284
SRR8749028	MeJA induced 9h	1.777
SRR8749029	MeJA induced 9h	1.172
SRR8749030	Uninduced	0.251
SRR8749031	Uninduced	0.304
SRR8749032	Uninduced	0.409

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.997
SRR8400027	Control - Root	1.110