Gene detail

Gene detail information of Glyur000412s00023293

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52770.1	9.00E-132	Phototropic-responsive NPH3 family protein
NR	XP_004506886.1	0	PREDICTED: root phototropism protein 3-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q5KS50\|NPH3_ORYSJ	2.00E-56	Coleoptile phototropism protein 1
trEMBL	tr\|A0A072UH38\|A0A072UH38_MEDTR	0	Phototropic-responsive NPH3 family protein {ECO:0000313\|EMBL:KEH28736.1}

Sequence

Transcript Sequence

>Glyur000412s00023293.1
CCTCTGCATGCAGCTTCTATCATTCGGTGCAGTCTAGGCCCTGCTTTTCTTCAAAACAAAGGTCACAAATTCCATGACCTTAACTATGTAATGTAAATATAAGCATGGTCTTATANGGAAAAACAAGTTTCACTGTTCCTTTGCCTATCCCTATTGGATTCCTTGCAAAGTCATTCTGCAGATGTAAACAGAACAAAGGCCAAACTCCAAATTCCTAATGCAATACATGAGATAGAGATAGAACAAAAGGGTCTGTTTCAAGTAGCTTTCAAGTTTGAAGGGTGCCATAATTAAATTTTGTTCTCCNTATACTGCCCAGCAGGATATGAGCAATATGGTCTGTTGTCTGCCATAGGGAGAGAACAAACAGTCTCATCAGTGGTCCTATTCCTCTCTCAACATGCCTTATCCACCCCACTTCATTCCCACCTTAAGAAATATCTCCTTCCCACAACAAGGTCAAGAGAATAAAATCTGACATAAGTGAGTGTTTTTTCNAAACACACTTTTATAATACAAAAACATGTCCAAGAATACAGCTACTAAAGCAACCAATTGCTCTTCTACTTTACTTGAGCTTCTCACAGAAATGAAGAAGCAATCCCATGNAGAACCAGTTACTTTCCCAGCAAAATCTCCATCACAATTCTCCTCCGAGTGCTGGTTTGATGATGCATGCATCCTGGACATGGATTACTTTGTGAAGACCCTTTCTGGGATCAAGGCTAAAGGCGTTCGCGCGGACTTGATTGGTTCCATCATCACACACTATGCATTCAAATGGCTCCCTGACCTCAGTGCAGGTGACATGGCTGAAAAGGGTCTAACGCAGTTTGAGGAATCGCCCGAGAGTGTCACTGCTTCATGGATGAAGAAGAGGTTCTTTGTGGAAACCTTAGTTGGTGTTCTGCCACCAGAGAAGGACTCCATCCCATGTAACTTCCTCCTTAGGCTTCTCAGAACAGCCAACATGGTTGGGGTTGAGGCAAGTTACAGACAAGAGCTTGAGAAGCGCGTTTCGTGGCAGCTAGACCAGGCTTCATTGAAGGAGCTTGTGATTCCTTCTTTTAGTCACACTTGTGGGACTCTATTGGATGTTGAGCTGGTCATTAGGTTGGTTAAGAGGTTTGTGAGTTTGGATAGTGAAGGGGCTAAAAGTGGTGCTGCTTTGGTTAAGGTGGCCAAGTTGGTTGATTCTTACCTTGCTGAGGCTGCCGTGGATGCAAATTTGAGCTTGTCTGAGTTTGTTACCCTTGCTGGGGCTCTTCCAAGTCATGCAAGAGCCACTGATGACGGATTGTACAGAGCCATTGATACTTACCTAAAAGAGGCATCACTTCATGCAGCTCAGAACGAGCGCTTCCCCGTGAGGGCCGTGATTCAGGTACTGCTCTCCGAGCAAACCAAACTCAACCGCCACAATATGGACTGGAGTGGCTCCATCGTAAGTGGCACCAGAAGCCCAACAATGAACGGGTTTGGACCAGACTCTGCGCCTGCGGCACGGTGTCTCTCAAAGCGCGAGATGAACGCTCAGCAAACGGAGATAAGGAGGCTGAGGGAAGACGTGCACAGGCTGCAAAGCCAGTGCAACGCCATGCAAGTGCAGATGGAGAGGATGGTGGAGAAGAAAAAAGGGTTCTTCAAGTGGAAGAGGTTTGGAGTGCATGGGTTTGGGAAAGGAGAGATTCATGTAGTGGAGAAAAATGAACAAGAGGGTGAAGGAGGAGAGGTTGATGAGTTTGGAATAAGGGGCACACCTATGACTAATTCTGATCAAATGAAAACCAGGTTGGTGAATGTCAAGGGTAGGACTCCNCATAGGTGGAGGAAATCCATGTCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00412	77315	80169	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000412s00023293.1	PF03000.9	NPH3	45	269	2.00E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.844
SRR1783600	control	0.978
SRR1783602	moderate drought stress	2.105
SRR1811619	moderate drought stress	2.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.468
DRR006520	Root Summer glycyrrhizin high producing strain	0.421
DRR006521	Root Winter glycyrrhizin high producing strain	0.060
DRR006522	Root Winter glycyrrhizin high producing strain	0.059
DRR006523	Root Summer glycyrrhizin low producing strain	0.063
DRR006524	Root Summer glycyrrhizin low producing strain	0.060
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.301

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.083
SRR2868004	Drought Stress (root)	0.341
SRR2967015	Control (root)	0.518

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.029
SRR9715740	Leaf	12.263
SRR9715741	Leaf	2.012
SRR9715739	Root	0.210
SRR9715742	Root	0.195
SRR9715743	Root	0.193

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.479
SRR8749028	MeJA induced 9h	0.923
SRR8749029	MeJA induced 9h	0.627
SRR8749030	Uninduced	1.951
SRR8749031	Uninduced	9.046
SRR8749032	Uninduced	9.727

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.564
SRR8400027	Control - Root	0.625