Gene detail

Gene detail information of Glyur000412s00023287

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15460.1	2.00E-180	HCO3- transporter family
NR	XP_006465393.1	0	PREDICTED: boron transporter 4-like [Citrus sinensis]
Swissprot	tr\|Q9XI23\|BOR4_ARATH	0	Boron transporter 4
trEMBL	tr\|B9RUZ6\|B9RUZ6_RICCO	0	Boron transporter, putative {ECO:0000313\|EMBL:EEF44729.1}

Sequence

Transcript Sequence

>Glyur000412s00023287.1
ATGGAGTGGTTAAAATCACCTTTGAAGGGAGTTGCCAATGATATACGAGGAAGAGCACAGTGTTATAAAGATGATTGGACTTGTGCTTTCCGTTCAGGAATTGGGATATTGGCCCCAACTACATGTATTTTCTTTGCTTCTGCTCTTCCTGTTATTGCCTTTGGCGAGCAGCTGAATAGAGACACAGATGGAAGGTTGAGCACAGTAGAAACACTAGCTTCTACAGCCATTTGTGGAATCATACACTCAATTATTGGTGGCCAACCACTCCTTATTGTNGGAGTTGCAGAACCTACCATCATCATGTACACCTACTTGTACAACTTNGCCAAAGATAGGGATGGCTTGGGACAAGAACTCTTTCTGGCTTGGGCAGGATGGGTTTGTGTTTGGACTGCTCTCTTGTTGATTCTTCTAGCAACATTCAATGCTTCCAGTATCATCAACAGATTTACAAGGGTTGCNGAGGAGCTTTTTGGCATGTTGATTACAGTCTTGTTCATTCAAGAGGCTATCAAGGGAATGNTAAAGGAGTTTCATGTTCCTAAGAATGAAAACTCAACATCAGACCAATACCAATTTCATTGGCTCTATGTGAATGGGTTACTGGGTATTATATTCACATTTGGCCTTCTCTATACTGCATTGAAGAGTAGAGGAGCAAGGTCATGGCTATATGGGACAGGGTGGTTGAGAAGTTTCATTGCAGACTATGGTGTGCCTTTCATGGTGGTAGTGTGGACAGTTGTGTCATTCTCGGTGCCAAGAAAACTACCTTCTGAAATCCCAAGAAGACTTGACATGGGGAAGGTTTCTCCAACATATATTTTTGCTGCTTTTATTCCTGCCTTGATGGTAGCAGGGCTTTACTTCTTTGACCANAGTGTTGCTTCCCGGATGGCACAACAGAAGGACTTCAATCTCAAGAAACCTTCTGCATACCATTATGACATATTGTTACTAGGATTCATGACTTTGCTTTGTGGATTACTTGGCTTACCCCCTGCAAATGCTAGCAACTTTGAAATCTATGGGAAGATGCAAGCAGTGTTTGTAGAAATGGACAGCAGCCCAGTTACTTCTGTGGAAAGAGAATTAGAGAACTTGAAAGAGGTTGTCCTAAAAGGTGAAGATAAAGGAGACAACAAGAAGGATACCTTTGACCCTGAGCATATTGATGAATATCTGCCTGTTAGAGTAAATGAGCAAAGAGTGAGCAATCTTGTACAATCACTCTTTGTTGGAGCCTCAGTCTTNGCCATGCCTGTCATAAAAAAGATTCCCACTTCAGTTCTTTGGGGATACTTTGCATANATGGCCATTGATAGTCTTCCTGGTAACCAATTCTGGGAAAGGATACTACTTCTCTTTGTAACACCTATGACATGGATTCCAATAGCAGGAATCTTGTTCCCTTTGCCTTTCTTTGTACTGATTTTGGTGAGGCAATATATCCTCCCCAAGCTGTTCAGTTCTCACCATCTAAGGGAACTAGATGGAGCTGAGTATGAGGAAATCGCTGTGTCTGATAGTGAAATATTAGATGAATTAACAACCAGCAGAGGAGAGTTGAAGNTCAGAACTGTTAGCTTTAGAGAGGAAAGACATGGTCAGCTTAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00412	19070	24446	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006820 anion transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0005452 inorganic anion exchanger activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000412s00023287.1	PF00955.16	HCO3_cotransp	6	181	1.20E-32
Glyur000412s00023287.1	PF00955.16	HCO3_cotransp	200	356	9.80E-16
Glyur000412s00023287.1	PF00955.16	HCO3_cotransp	399	463	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.837
SRR1783600	control	9.931
SRR1783602	moderate drought stress	3.123
SRR1811619	moderate drought stress	3.110

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.067
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	226.057
SRR2868004	Drought Stress (root)	198.490
SRR2967015	Control (root)	204.454

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.658
SRR9715740	Leaf	3.984
SRR9715741	Leaf	3.171
SRR9715739	Root	5.046
SRR9715742	Root	5.278
SRR9715743	Root	4.814

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.978
SRR8749028	MeJA induced 9h	23.796
SRR8749029	MeJA induced 9h	9.707
SRR8749030	Uninduced	47.311
SRR8749031	Uninduced	55.631
SRR8749032	Uninduced	26.457

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.233
SRR8400027	Control - Root	40.737