Gene detail

Gene detail information of Glyur000411s00028748

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.1	3.00E-61	Disease resistance protein (TIR-NBS-LRR class) family
NR	AHG29002.1	0	NBS-LRR protein [Cicer arietinum]
COG	YP_001522729.1	2.00E-08	WD-containing repeat protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-60	TMV resistance protein N
trEMBL	tr\|W0LWS3\|W0LWS3_CICAR	0	NBS-LRR protein {ECO:0000313\|EMBL:AHG29002.1}

Sequence

Transcript Sequence

>Glyur000411s00028748.1
ATGAAAGTTGTTGGCTATGTTACTGATCGGCTAGACATGACAGAGTTATTTGTTGCAGAGCATCCAGTGGGGATAGAATCTCGTGTTCAAGATGTTATTCAACTCTTGAACAGACATCAATCAAAAGATCCTCTGCTACTAGGTATATGGGGGATGGGAGGGATTGGAAAAACAACCATTGCTAAAGCTGTTTATAATGAAATTCGTCGTGATTTTGAGGCAAAGAGCTTCCTCCTAAATGTTAGGGAAGTTTGGGAACAAGATAATGACAAAGTCTCTTTACAGCAACGACTTGTTTCTGATATCTACAAAACAACAAAAATAAAGATTGATTCAATTGAATCAGGGAAGAAAATATTACAGGAAAGACTTCGCCAGAAGAGGATATTTCTTGTTCTTGACGATGTGAACAAATTGGACCAACTGAATGCTTTGTGTGGAAGTCATGAATGGTTTGGTCAAGGAAGCCGAATAATCATCACAACAAGACATGCTGAGTTACTTAGTGGGCTAAAAGTTGACCATGTATATGAAATTAAAGTAATGGATGACAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAACCAAGTCCTATCGAAGATTTTGTTGTCCTTTCTAAAGATGTTGTTCAGTACTCTGGGGGATTACCGCTAGCTCTACAAGTCATTGGGTCCTTTTTATTGACTAGGAGAAGGAAAATAGAATGGAAGAGTGTATTGGAGAAACTCAAAATCATTCCCAATGATAAAGTGCTAGAGAAGCTCAAAATAAGTTTTGATGGTTTAGGTGATGACGATGTAAAAGAAATATTCCTTGACATTGCCTTTTTCTTTATTGGGATGGACCAGGAAGATGTAACTAAGATATTAAAAGATTGTGGACATTTTCCAGAAATTGGAATAAGTGTGCTCGTCCAACGAAGCCTCATAACTCTTGATAGGAAAAACAAGATTGGAATGCATCATTTGCTACGAGACATGGGAAGAGCAATCGTAAACGGGGGCAAGGAACCTAGTAGAAGCATCTACAAGTTAGAGTCACTGAAAACTCTCATTCTCTCTGGTTGTATAAAAATTGACAAGTTGGAAGAGGATATAGAGCAAATGAAATCTTTAACCACCCTGGTTGCAGAAAAGACAGCTATAACAAAAGTGCCCTTTGCAGTAGTAAGATCAAAGAACATTGGATATATTTCTGTGTGTGGCTATGAAGGATTCTCACGCAATGTATTTCCTTCTATTATTCAGTCTTGGATGTCTCCAACAAATAATGTCTTTTCCCTAGTTCAAACATCAGCGGGCATGTCATCTCTTGATTTCTTGGATGAACAAAATGGTAGTTTCTATGGTTTGTCCTCTATTTTTAAAGACCTCCATAATCTTCAACGTCTTTGGTTGAACTGTGATTCAGAAGCTCAACTGAATCAAATTGAAGCTAGTATTTTGGATAATACATGTTTAGAAATTAATTGTGAGGAATTTGAAGCAATGCCAAAGACGCCACAAAATTCAAATGTCAGGGCTTCAACATCAATTATCGATTGTAGCAGTCAAGTTCGTATTTCGAGCTCAAAAGCACTGCTTTTAATTCAAATGGGAATGGATTGTCATGTCGCCAATATTGTGAGAGAAAACATTTTACAGAAAATGCCTCCCAATGGGTCTGGTCTTCTTCTTGGTGACAATTATCCTGATTGGCTAACCTTCACTGGTAACGGTTCTTCTGTTACTTTCGAAGTACCTCAAGTGGATGGTCGTAATTTGAAGACAATCATGTGCGTTGTCTATTCTTCTTCCCCAGACAAGATAAGTTCAGAAGGCCTTAAGGTTGTGATGGTGATAAATTGCACAAAGAACACCATTCTGCTCTGCAAGAGAGACGCATTGTTAGCCTTCTCTGATGAGGAGGAGTGGCAGAGGGTAGTGTCAAATGCAGAACCCGGTGACAAAGTGAAGGTCATTGTTGTTTTTGGATATAAGTTCATTGTGAAGAAGACAACAGTTTACCTTATATATGATGAACCAATTGACGAAGAGACGAAGGAAGAGACGGAGCATTACCTTGAGCCAAACGAGAATATCAATCTTTCTAGTGGCAATGACAATATTGGTGACCCCAAGAAGAAAACAAAAGTTTCAAAAGGCAAAAATGTTCACATTGATCCTTATGCTGAAGAGGATTGGAGTGATGGTGACCAAGAAAAGAAAGAAGACTCTTCAACAGCTTTTGAGCATTCGAAGCCAGACTCGAAAGTAGACTCTAAATCTGAAGTCCTTACTTTAAAGAAAGCTCCAACTTCTAAAGAGGACTTGCCCCCACCTTCAGAGTGTGTAAAGACCGAAATAAAGTCTTCAAAGGGCGAGACTCAAAAGCCTCCTCTTCCCGAAAGGATCAGAATCAAATCCTTGGATTCAAAATCCTCTAGCTCCCCCCTTCCAGACACTCCGCAGAAACCTTCTAATAAGGAAGCGGATTCAGTCCGAGAGAAAACTCATACTTCTGTTGTTGCAAAGCCTATCTTGTCCATTTCTCAAGAGGTTTTAGAAAAAAATCCTCTTTCAAACCAAGTTGATCCTATGGAAGTTGATACTCAAGGAAATGATTTTGACGCTGCATCGAATGTCCTCAACCAAGAGCAAGAAGTTGAAACCAATTTGGGTTTCGAAGAACATCAAGAAAAACCCCAAGAGGAGCATCCAAAAAAGAAACTTGAGGGTTCCACTAAGTCGTCGCCAACTAAGGGCCCAAATGAAGAGAAGGCACCAGTATCAGATCCTTCTTACACTCCACTGAGTTCTGGATTGCCAGATTTTGAAGAATTGCTTGCCATTGACCCAGCAACTGCTATGGACAAGCTTCTCGCAGGTGAATTCAGTCATTCGAGCAAGACCGAGCAAGCTTCAAGTGAACCCACTTCTTCTCATACTAGCTCCAACGTCCTCAATGCTGAACTTCAGAAACTGAAGAAGTTAGTTCTTCAAAAGAAATTTTTAAGTTTGCTTCTGAATGACCAAGAGATGAAGACTGAGGTTAACACCCTGATTGATTCTATTGAGGCCAAACTTAAGGACCTAACTATCGAGCAGTACGCTGGTTTTATAAAATTTTCAAAGCTCTTCAAGACTGCCATCACCAACATTGATGCATCTTTGAAAAATAAGCAACAATTAATGAATACTGAAACTGAGGCAAAAGATGCTACTGCTCGATTGGTTGTTGCCAGGAAGGACATGGACAGGTATAAAGAATCCATCACAGCTGGGAATAAGAAACTTGAGGAATGGAATACTGAAATTCCCAAAATCGAGGCTGAATTACAACGCATCAAGGAGAAACTGGAGCATGCCAAGCAGGAGAAGAATATGCTCGAAAGCCTTCATCCCAAGCTAGTGGAAAAGCAAACCGAAGTTCTTGAAGGGGCGAAGAAACTTTCGAAAACCGTTTTCACCCTTCAAGAAAAAGTTGCGCAGTACAAGCAAAAGGAGAAAGAACTTGAGTCGGAGTATGTAGAATTCGAAGCAAACTTTAAGCAGTTGAAGGATGATTTTCCATTTTGAACTCTTTTTGCTTTAGCTTTATTTATTTTGTAAA

Protein Sequence

>Glyur000411s00028748.1
MKVVGYVTDRLDMTELFVAEHPVGIESRVQDVIQLLNRHQSKDPLLLGIWGMGGIGKTTIAKAVYNEIRRDFEAKSFLLNVREVWEQDNDKVSLQQRLVSDIYKTTKIKIDSIESGKKILQERLRQKRIFLVLDDVNKLDQLNALCGSHEWFGQGSRIIITTRHAELLSGLKVDHVYEIKVMDDNESLELFSWHAFKQPSPIEDFVVLSKDVVQYSGGLPLALQVIGSFLLTRRRKIEWKSVLEKLKIIPNDKVLEKLKISFDGLGDDDVKEIFLDIAFFFIGMDQEDVTKILKDCGHFPEIGISVLVQRSLITLDRKNKIGMHHLLRDMGRAIVNGGKEPSRSIYKLESLKTLILSGCIKIDKLEEDIEQMKSLTTLVAEKTAITKVPFAVVRSKNIGYISVCGYEGFSRNVFPSIIQSWMSPTNNVFSLVQTSAGMSSLDFLDEQNGSFYGLSSIFKDLHNLQRLWLNCDSEAQLNQIEASILDNTCLEINCEEFEAMPKTPQNSNVRASTSIIDCSSQVRISSSKALLLIQMGMDCHVANIVRENILQKMPPNGSGLLLGDNYPDWLTFTGNGSSVTFEVPQVDGRNLKTIMCVVYSSSPDKISSEGLKVVMVINCTKNTILLCKRDALLAFSDEEEWQRVVSNAEPGDKVKVIVVFGYKFIVKKTTVYLIYDEPIDEETKEETEHYLEPNENINLSSGNDNIGDPKKKTKVSKGKNVHIDPYAEEDWSDGDQEKKEDSSTAFEHSKPDSKVDSKSEVLTLKKAPTSKEDLPPPSECVKTEIKSSKGETQKPPLPERIRIKSLDSKSSSSPLPDTPQKPSNKEADSVREKTHTSVVAKPILSISQEVLEKNPLSNQVDPMEVDTQGNDFDAASNVLNQEQEVETNLGFEEHQEKPQEEHPKKKLEGSTKSSPTKGPNEEKAPVSDPSYTPLSSGLPDFEELLAIDPATAMDKLLAGEFSHSSKTEQASSEPTSSHTSSNVLNAELQKLKKLVLQKKFLSLLLNDQEMKTEVNTLIDSIEAKLKDLTIEQYAGFIKFSKLFKTAITNIDASLKNKQQLMNTETEAKDATARLVVARKDMDRYKESITAGNKKLEEWNTEIPKIEAELQRIKEKLEHAKQEKNMLESLHPKLVEKQTEVLEGAKKLSKTVFTLQEKVAQYKQKEKELESEYVEFEANFKQLKDDFPF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00411	62502	72598	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000411s00028748.1	PF00931.17	NB-ARC	26	297	7.70E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.171
SRR1783600	control	0.091
SRR1783602	moderate drought stress	0.201
SRR1811619	moderate drought stress	0.217

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.782
DRR006520	Root Summer glycyrrhizin high producing strain	4.630
DRR006521	Root Winter glycyrrhizin high producing strain	3.716
DRR006522	Root Winter glycyrrhizin high producing strain	3.574
DRR006523	Root Summer glycyrrhizin low producing strain	2.429
DRR006524	Root Summer glycyrrhizin low producing strain	2.418
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.853
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.886

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.108
SRR2868004	Drought Stress (root)	5.012
SRR2967015	Control (root)	4.087

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.042
SRR9715743	Root	0.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.666
SRR8749028	MeJA induced 9h	1.677
SRR8749029	MeJA induced 9h	0.977
SRR8749030	Uninduced	1.839
SRR8749031	Uninduced	2.338
SRR8749032	Uninduced	1.166

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.488
SRR8400027	Control - Root	0.410