Gene detail information of Glyur000410s00016205 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78260.1 | 4.00E-38 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | KHN24344.1 | 3.66E-119 | RNA-binding protein 38 [Glycine soja] |
| COG | YP_003267833.1 | 1.00E-13 | RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9LKA4|UBA2C_ARATH | 3.00E-17 | UBP1-associated protein 2C |
| trEMBL | tr|I1MAU7|I1MAU7_SOYBN | 2.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G35110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00410 | 159080 | 164358 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000410s00016205.1 | PF00076.17 | RRM_1 | 18 | 75 | 3.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.962 |
| SRR1783600 | control | 0.969 |
| SRR1783602 | moderate drought stress | 0.965 |
| SRR1811619 | moderate drought stress | 0.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.815 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.752 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.035 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.966 |
| SRR2868004 | Drought Stress (root) | 20.842 |
| SRR2967015 | Control (root) | 19.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.730 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.564 |
| SRR9715739 | Root | 0.121 |
| SRR9715742 | Root | 0.910 |
| SRR9715743 | Root | 0.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.069 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.443 |
| SRR8400027 | Control - Root | 4.685 |