Gene detail

Gene detail information of Glyur000410s00016193

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04930.1	0	aminophospholipid ATPase 1
NR	XP_006599738.1	0	PREDICTED: phospholipid-transporting ATPase 1-like isoform X3 [Glycine max]
COG	YP_003891428.1	9.00E-08	ATPase P [Sulfurimonas autotrophica DSM 16294]
Swissprot	tr\|P98204\|ALA1_ARATH	0	Phospholipid-transporting ATPase 1
trEMBL	tr\|K7MJ29\|K7MJ29_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G34611.2}

Sequence

Transcript Sequence

>Glyur000410s00016193.1
CTACTATTGATTATTGATCATCCTATCCTCCCTTTACTTTGGTTGGGGTTTGGCTTTGCCTGTTCTGGTTTTCCCGTTACATTCCATTCCTCCACCACGAGGCAAGGCAAGGCATAACAACACCACCTTCTCCTGAATTCCGCGCTGCATTTATTTCTCTTCCCGCACCATCTCATCATCAGGAGGGGGAAGGAGGGAGTGGAAACTTCAAAAATCACAATCATGAATGCAGTGCAATGACTCTAGCTACAATGTGGGCTTGAAGGCCCAACCCTACAATGTATTATCCCTTTAGGGTTGTTGAAGTCTCAATGTACTGACTGAAACAAGTTACCCATTGGAGTGCCCCACGTCAGGAGGGGGGTCGTGGAGTGCATACAATGGAGCTGAATATGAGTAGTGTTCCCCCCTTTGAAACATATTCTTCTGCACCTCAAGCTGGTGTTCAGAGGATCCGTCACAAAAGTGTGCAGTTTGAATTGGATGACAACTCCCTCTTACGTGACGGCAATGTGAGGTTGATCTATGTCAATGATCCCAACAAGACTAACCAGGAGTATGAGTTCTCTGGGAACGAGATTCGAACCAGCAGATACACTCTCCTCACCTTCTTGCCTAAGAACCTCTTCATTCAGTTCCACCGGGTTGCTTATCTCTATTTCCTTGCCATTGCAGCCCTCAATCAGCTCCCTCCTCTTGCTGTCTTCGGGAGAACCGTCTCTCTTTTCCCACTCCTGTTTGTCCTCTGTGTCACTGCGGTTAAGGATGCCTATGAGGATTGGCGTAGGCACAGGTCGGATCGTAATGAGAACAATCGAGAGTCTCTGGTCCTTCAATCCTCTCAGTTCTGCCCCAAGAGGTGGAAAAAGCTGCGAGCCGGCGACGTGGTTAAGATCTTTGCTGATGAGATGATTCCNGCTGACATGGTCTTGTTGGGGACAAGTGGTCAGAGTGGGCTTGCCTATATTCAGACCATGAATTTGGATGGGGAATCGAATTTGAAGACGAGGTATGCTAGGCAGGAGACAGCTTCTGCAGTGATGCCGGAAGCTGCTTGTGTCTCTGGAATTGTTAGGTGTGAGCAGCCTAATCGGAATATTTATGAGTTCACTGCCAACATGGAGTTCAATGGGCATAAGTTTCCCCTTAACCAGTCAAACATTGTGCTGCGTGGTTGCATGCTGAAGAACACGGATTGGGTGATTGGTGTTGTGGTTTATGCAGGACAGGAAACAAAAGCAATGTTGAACAGTGCGGCTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAATAGAGAGACCTTTTGGTTGTCGGTTTTTCTTTTTACCATGTGTTCAGTTGTGGCCCTTGGGATGGGTCTCTGGCTGCTGCGCCACAAGAACCAGATTGACACTTTGCCTTACTACAGAAAAACCTACGTCAATGCTGGGCNGGATAATGGAAAGAGATATAAATATTATGGGATACCGATGGAAACATTCTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATAATGATACCGATATCTCTCTACATCACAATGGAGTTGGTTCGTTTGGGTCAGTCCTACTTCATGATTGAGGACGCGGATATGTATGACGCTAACACTGGATCAAGGTTCCAGTGTAGATCATTAAATATTAATGAAGATTTGGGTCAAATTCGCNATGTGTTTTCAGACAAGACAGGAACACTGACAGAAAACAAAATGGAATTCCNGAGAGCTAGTGTACATGGGAAGAACTATGGGAGCTCCCTGCTCATGACTGATAATAATACAGCAGCTGTTATTGGTAGACGTAGATGGAAGCTCAAGTCTGAAATTGCTGTTGATTCTGAATTGATGGAATTGTTGCAAGAAAACCCAAATACAGATGAAAGAATTGCTGCTCGTGAGTTTTTCCTTACATTGGCTGCTTGTAATACTGTGATCCCTATTATTAGTGGCAGTAGCTTTTCCAGTTGTGGAACAAGTGAATCAGATGAAGACATAGAAAGTATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGGTATACTCTTTTTGAGCGAACATCGGGGCANATTGTTATTGACATCAAGGGTGAGAAACTCAGGTTGGATGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCTGTTGTTATCCGATTTCCTGACAATGTTGTAAAGGTGGATCTTTCAGATGCAGAAGTTGAGGAGTGGCAAAGCATGTATGATGATGCCAGCACTTCATTGACCNACCGAGCTGCAAAACTACGTCAAACAGCAACTTTTATAGAATGCAACCTAAAGCTACTNGGAGTAACTGGAATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCTCTGCGGCAAGCTGGCATTAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACNGCAATTTCAATTGGTCTTTCCTGCAAACTTCTGAGTGCGGATATGCAGCAGATCATTATAAATGGCACCTCAGAGGTTGAATGTAGAAATCTCTTTGCCGATGCTAAAGCCAAATATGGTGTGATATCTTCAAGTAGAGGGCATCAGAATCTGAAGGACAAAACCAATGCTAGACATGGTGGTCCTGATGTTCCCAATGATATGAAGTCATTGAGCATGTCCAAGTGGAATCCAGGAAAGGAAGAAGGAACCACTGCTCCATTGGCACTCATAATAGATGGAACCAGTTTGCTTTTCNACCTTGCAACTTCCTGTGCGGTTGTGCTATGCTGCCGTGTTGCACCCTTGCAGAAAGCAGGAATTGTTGATCTGATAAAGAGCCATACAGATGATATGACACTGGCTATTGGTGATGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTTATGGCATCAGATTTTGCAATGGGACAATTTCGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGATTGGAGTAGTGTATTCTATTCTGTGATATACACATCTATCCCTACAATCGTAGTTGGTGTTCTGGACAAAGACTTGAGTCATAGGACACTCTTGCAGTATCCAAAACTGTATGGTTCAGGTCACCGGCAAGAGGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACTCTATGGCAGAGCCTTGTTCTCTTCTACATTCCCCTATTCACCTATAAGGACAGCTCAATTGATATATGGAGCATGGGCAGTTTGTGGACTATTTCGGTTGTTATCCTTGTAAATGTACACCTTGCTATGGACATCAACCGTTGGGTCTTAATTAATCATGTTGCTGTATGGGGATCGATAATCATTACATATGGTTGNGTGTTGGTATTGGATTCTATACCTGTCTTTCCTAATTACTGGACTTTTTATCATTTGGCAAAAACCCCTACATACTGGATAACAATTTTGCTTATAATAGTTGTGGCTTTGCTCCCTCGCTTTACTTGCAAAGTTGTTTATCAGATTGGTTGGCCTTCGGATATCCTGATAGCTAGAGAAGCTGAGGCAATGAGAAAGAAACATGATGATTTGAAGCCACGAATGAGTAGCCGGAGCAGATTGCACCAAAGGGAAACAGATGCTTGCATCCTACATAGTAACCAAGTGTATACATGGGGAATCGCATGTGAAGTTATGAAGCCAAGCCCAGTAAATGCTTCGGGTAATGAAAGAGGGAGTTTGGAGAGACTCAGAGAGGTATCTCGGCAATTAATTTAATTGTGGGTAGAATTTGACAGGTGGGGCATTGGCGACATGATTGTGATCCACTGCTCCTATCCTATGAGTTGCTTGTTTGAGAGAATGGTTATAGACTTATAGTGATAACCATATGTATGCAGTATGTACAATAGTTTCTGTAATTAATTGTGGGTAAAAAAATCAGGTTTTTTTACAAAGGAAAAAGTTTGTCTCAAGAAAGGGTAACATAAAATAAGAGTGTAATTTCCACAGTCCTATCCTTACGGCTGTGTCCCGTTTTCTGCNAGTTTCCTCACCTTTGCTACAACAGGCTTCAACTTAAAGATGCAATTGTAAATGCAATTGCAAAAGCACTTGGAAGT

Protein Sequence

>Glyur000410s00016193.1
MELNMSSVPPFETYSSAPQAGVQRIRHKSVQFELDDNSLLRDGNVRLIYVNDPNKTNQEYEFSGNEIRTSRYTLLTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAVKDAYEDWRRHRSDRNENNRESLVLQSSQFCPKRWKKLRAGDVVKIFADEMIPADMVLLGTSGQSGLAYIQTMNLDGESNLKTRYARQETASAVMPEAACVSGIVRCEQPNRNIYEFTANMEFNGHKFPLNQSNIVLRGCMLKNTDWVIGVVVYAGQETKAMLNSAASPSKRSKLESYMNRETFWLSVFLFTMCSVVALGMGLWLLRHKNQIDTLPYYRKTYVNAGXDNGKRYKYYGIPMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDADMYDANTGSRFQCRSLNINEDLGQIRXVFSDKTGTLTENKMEFXRASVHGKNYGSSLLMTDNNTAAVIGRRRWKLKSEIAVDSELMELLQENPNTDERIAAREFFLTLAACNTVIPIISGSSFSSCGTSESDEDIESIDYQGESPDEQALVSAASAYGYTLFERTSGXIVIDIKGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVDLSDAEVEEWQSMYDDASTSLTXRAAKLRQTATFIECNLKLLGVTGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIIINGTSEVECRNLFADAKAKYGVISSSRGHQNLKDKTNARHGGPDVPNDMKSLSMSKWNPGKEEGTTAPLALIIDGTSLLFXLATSCAVVLCCRVAPLQKAGIVDLIKSHTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRYILCTAFSTTSALTDWSSVFYSVIYTSIPTIVVGVLDKDLSHRTLLQYPKLYGSGHRQEAYNMQLFWITMIDTLWQSLVLFYIPLFTYKDSSIDIWSMGSLWTISVVILVNVHLAMDINRWVLINHVAVWGSIIITYGXVLVLDSIPVFPNYWTFYHLAKTPTYWITILLIIVVALLPRFTCKVVYQIGWPSDILIAREAEAMRKKHDDLKPRMSSRSRLHQRETDACILHSNQVYTWGIACEVMKPSPVNASGNERGSLERLREVSRQLI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00410	76416	82965	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000410s00016193.1	PF00122.15	E1-E2_ATPase	118	396	3.90E-20
Glyur000410s00016193.1	PF12710.2	HAD	434	840	1.10E-14
Glyur000410s00016193.2	PF00122.15	E1-E2_ATPase	118	396	4.10E-20
Glyur000410s00016193.2	PF12710.2	HAD	434	887	4.40E-15
Glyur000410s00016193.3	PF00122.15	E1-E2_ATPase	118	396	4.10E-20
Glyur000410s00016193.3	PF12710.2	HAD	434	887	4.40E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.725
SRR1783600	control	6.888
SRR1783602	moderate drought stress	6.650
SRR1811619	moderate drought stress	6.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.463
DRR006520	Root Summer glycyrrhizin high producing strain	8.386
DRR006521	Root Winter glycyrrhizin high producing strain	4.935
DRR006522	Root Winter glycyrrhizin high producing strain	5.027
DRR006523	Root Summer glycyrrhizin low producing strain	9.108
DRR006524	Root Summer glycyrrhizin low producing strain	9.128
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.741

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.193
SRR2868004	Drought Stress (root)	11.185
SRR2967015	Control (root)	12.004

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.660
SRR9715740	Leaf	1.442
SRR9715741	Leaf	1.217
SRR9715739	Root	1.353
SRR9715742	Root	5.364
SRR9715743	Root	4.745

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.802
SRR8749028	MeJA induced 9h	4.945
SRR8749029	MeJA induced 9h	1.916
SRR8749030	Uninduced	1.986
SRR8749031	Uninduced	1.149
SRR8749032	Uninduced	2.496

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.960
SRR8400027	Control - Root	11.406