Gene detail

Gene detail information of Glyur000410s00016183

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45050.1	3.00E-46	GATA transcription factor 2
NR	XP_003530174.2	1.51E-90	PREDICTED: GATA transcription factor 2-like isoform X1 [Glycine max]
Swissprot	tr\|O49741\|GATA2_ARATH	2.00E-56	GATA transcription factor 2
trEMBL	tr\|I1KJP6\|I1KJP6_SOYBN	2.00E-91	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G14750.1}

Sequence

Transcript Sequence

>Glyur000410s00016183.1
GAACGAGTAGTTTATTAGTGTGAGGAGTGCATGCTCGCTCACACTCATCTCCTTCTCTCTCACTCCTATTCAAGCAGTCACGTTCCCCTGCCCCCCCACCCCAATTCTCTATCAATATCTGAGTCTCTCTTCCCCCTATTCTCTGCGCGAGTCTGCTCCAAACCCCAAACAAACCCCTCTCTCTCTCTCTCTCACTCACTGAAACAGCTATATAGCAGAGAGAGAAAGAGAGAAAAATAAACTATGGACATGTACGGTGGTTCCCTTTCCAACCCACCTCCACCCGATCATTGCCTNCGCATTGATGATTTTCTAGATTTCTCCAACCTTCCCCCGCCGCAGCACTCTTTCCCCGACCACTCCGATTTCTTCGCCAATTTCCCTTCCGTCCCCAGTGACGAAGCAGCGGAGCTAGAATGGCTCTCCCAATTCATCGACGACACNACGACGTCGTTTCACGACTTCCCACCGAGCAACCACACCATTCCCATCGGATCCCGAACGACGTCNTTTCTCGCCAACAATGACGCCAATACTGATCATAATAGTACTACCAAATCGCCAGATCATGTAATTCCTTCTCCGTCGTCGTCGTCGGTCGCCGGGAAATCGAGATCGAAGAGGGAGGCGAACGGAGGGTCACCGGCGGGAGAGGGAGGGGTTAGGAGGTGCAGCCACTGTGCGTCGGAGAAGACGCCGCAGTGGCGAACGGGACCCCTGGGGCCGAAGACGCTGTGCAACGCGTGCGGCGTGAGGTTCAAGTCGGGTCGGCTAGTGCCNGAATACAGACCCGCGGCGAGCCCCACCTTCGTGCTGACGCAGCACTCCAACTCTCACCGGAAAGTGATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGCCACCAACAGCAACCGCAACAGCAGCAACAGGAGGAGCAATGCTACCGTCACAAGCATGACTTCCAAGTCTGCTGACGTTTTCCCTTGTCGGTGCCGCTCATCTTTAATTTGTTTTCCTTTTTTTTTTTTATGTTACTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00410	24316	25475	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0008270 zinc ion binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000410s00016183.1	PF00320.22	GATA	143	177	8.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.573
SRR1783600	control	0.537
SRR1783602	moderate drought stress	0.696
SRR1811619	moderate drought stress	0.728

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.466
DRR006520	Root Summer glycyrrhizin high producing strain	6.623
DRR006521	Root Winter glycyrrhizin high producing strain	0.108
DRR006522	Root Winter glycyrrhizin high producing strain	0.107
DRR006523	Root Summer glycyrrhizin low producing strain	16.868
DRR006524	Root Summer glycyrrhizin low producing strain	15.824
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.409
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.763
SRR2868004	Drought Stress (root)	2.329
SRR2967015	Control (root)	3.825

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.258
SRR9715740	Leaf	1.514
SRR9715741	Leaf	2.125
SRR9715739	Root	15.498
SRR9715742	Root	14.051
SRR9715743	Root	13.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.508
SRR8749028	MeJA induced 9h	13.164
SRR8749029	MeJA induced 9h	24.882
SRR8749030	Uninduced	9.600
SRR8749031	Uninduced	0.245
SRR8749032	Uninduced	5.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.019
SRR8400027	Control - Root	1.687