Gene detail

Gene detail information of Glyur000409s00019952.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55020.1	lipoxygenase 1
NR	KEH35160.1	seed linoleate 9S-lipoxygenase [Medicago truncatula]
Swissprot	tr\|P09439\|LOX2_SOYBN	Seed linoleate 9S-lipoxygenase-2
trEMBL	tr\|A0A072VAE0\|A0A072VAE0_MEDTR	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000409s00019952.1
ATGTTTCCAATCTTCAACAGGGGCCATAAGATACGGGGAACGGTGGTGTTAATGAGCAAGAATGCGTTGGACCTGAACTCCGTCCGTAGTGGCGTTTCAGTGGCGGGNACCGTTGACCTTGCCATGGACATTTTTGGCGCCGTTGTCGACGGTGCCACTGCCATCTTGAGCCGCAGTGTCGCCTTACAGCTGATCAGTGCTACCAAGACCGACCATTCTAAGAGTGAGAGGCCAGGCNACATTAATTATGTTCCGAGGGATGAAATGTTTGGTCACTTGAAGCAATCAGATTTCATTGGATTTGGAATAAAAGCTGTGAATCAAAATGTGATACCCGGTTTTCACAAACTATTTGATCGTGACAATGAGTTTNATAGTTTCGAAGAAGTGCGTTCCATCTTTGAAGGAGGAGTTAAGCTACCTACGGATATGATCAGCAGCATTACCCCCATACCCGTGCTTAAGGAAATCCTCCGTACTGATGGTGAACAATTCCTCAAGTTTCCACCACCCAAAGTCATTCAAGTTAACAAGTCTGCATGGATGAGTGATGAAGAATTTGCAAGAGAGATGCTCGCGGGTGTAAATCCATGCTTGATTCGTCGTCTTCAAGAGTTCCCACCACAAAGCAAGCTAGATCCCAAACTGTATGGTGATCAAACCAGTACAATAACCAAACAGCACTTGGAGATTAACCTTGATGGCCTCACGGTAGAGCAGGCAATTGATGATGTGAGATTGTTCATATTGGATCACCATGACGCATTCATGCCATACTTGAGTAAGATAAACAAACCCNCTCCAAAGGCTTATGCCACAAGGACAATCCTATTCCTGAAAGATAATGGGACTTTAAAGCCATTAGCCATCGAACTAAGTTTGCCACATCCCGATGGAGATGAATTTGGCGCTGAGAGTAAAGTCATTTTGCCTTCAACACGTGAAGATGATGTTAAAAACACAATTTGGCTATTGGCCAAGGCTTATGTAGTCGTAAATGACTCGTGCTATCATCAACTCATGAGNCACTGGTTAAATACTCATTGCGCGATTGAGCCATTTATCATAGCTACAAACAGGTGTCTCAGTGTGCTTCATCCTATTCATAAGCTTCTACTTCCTCACTATCGTGACACAATGAATATCAACGCGCTTGCNCGAGGTTCACTTATTAATGCCGGTGGTATTATAGAGCAAGCATTTTTGCCAGCAGAGTATGCTGTGGAGATGTCTTCAGCAGTTTACAAGGGCTGGGTTTTCCCCGATCAAGCACTACCAGCTGATCTTATCAAGAGAGGAATGGCAGTTAAGGATCCTTCTTCACCCCATGGACTTCGCCTTGTGATAAAAGACTACCCTTACGCAGCTGATGGGCTAGAGATATGGGAAGCTATTAAGACATGGGTCCATGACTATGTCACCTTGTACTACAAGAAAGATGTGGATGTTCAAAGAGATTCTGAGCTCCAAGAGTGGTGGAAAGAAGTTGTAGAGAAGGGTCATGGTGATCTGAAAGATAAGCCATGGTGGCCTAAGATGCACACCGTTGAAGAGCTTATTGAATCACTCAGCATCATCATTTGGCTTGCCTCTGCCTTCCACGCAGCTGTCAATTTTGGACAATACCCTTATGGTGGTTTAATCTTGAACCGACCAACTCTTACAAGAAGATTAATTCCTGAAAAGGGTACTCCAGAATATGATGAGATGGTGAAGTTTCCTCAGAAGGCTTATTTGAGGACAATCACACCAAAGGCTGAGGCACTTATTGACCTTACAGTAATTGAGATATTATCAAGGCATGCTTCTGATGAGGTTTACCTTGGTGAGAGGGATCATGATAGTGATTGGACATCTGATTCAGATGCAATAAGAGCATTTAAAAAGTTTGGAAACAAGATAAAAGAGATTGAGAAGAAACTTGATGAGAGAAACAATGATCCAGATCTGCAGAACCGATTGGGCCCTGTTGAGATGCCATACACTTTGCTTCATCCTACTAGTGAGGAAGGATTGACTTGTAGAGGAATCCCCAACAGTGTCTCTATCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00409	153129	159916	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000409s00019952.1	PF00305.14	Lipoxygenase	69	667	2.40E-284

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	3.315
SRR1811619	moderate drought stress	3.349

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.301
DRR006520	Root Summer glycyrrhizin high producing strain	0.305
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.052
DRR006523	Root Summer glycyrrhizin low producing strain	1.950
DRR006524	Root Summer glycyrrhizin low producing strain	1.758
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.380
SRR2868004	Drought Stress (root)	8.765
SRR2967015	Control (root)	20.834

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	699.118
SRR9715740	Leaf	54.140
SRR9715741	Leaf	177.977
SRR9715739	Root	0.118
SRR9715742	Root	17.578
SRR9715743	Root	14.631

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.206
SRR8749028	MeJA induced 9h	2.844
SRR8749029	MeJA induced 9h	1.841
SRR8749030	Uninduced	0.977
SRR8749031	Uninduced	0.856
SRR8749032	Uninduced	1.161

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.232
SRR8400027	Control - Root	1.426