Gene detail information of Glyur000409s00019949 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22260.3 | 6.00E-62 | Cysteine proteinases superfamily protein |
| NR | KHN06282.1 | 2.46E-92 | OTU domain-containing protein [Glycine soja] |
| trEMBL | tr|V7BLN5|V7BLN5_PHAVU | 3.00E-92 | Uncharacterized protein {ECO:0000313|EMBL:ESW17955.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00409 | 143367 | 147967 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000409s00019949.1 | PF02338.14 | OTU | 105 | 155 | 1.50E-07 |
| Glyur000409s00019949.2 | PF02338.14 | OTU | 105 | 189 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.368 |
| SRR1783600 | control | 8.285 |
| SRR1783602 | moderate drought stress | 9.785 |
| SRR1811619 | moderate drought stress | 9.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.777 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.226 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 72.191 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 69.666 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.535 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.951 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.203 |
| SRR2868004 | Drought Stress (root) | 33.385 |
| SRR2967015 | Control (root) | 26.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.790 |
| SRR9715740 | Leaf | 32.516 |
| SRR9715741 | Leaf | 40.324 |
| SRR9715739 | Root | 6.677 |
| SRR9715742 | Root | 10.318 |
| SRR9715743 | Root | 11.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.405 |
| SRR8749028 | MeJA induced 9h | 54.975 |
| SRR8749029 | MeJA induced 9h | 67.963 |
| SRR8749030 | Uninduced | 139.870 |
| SRR8749031 | Uninduced | 108.518 |
| SRR8749032 | Uninduced | 72.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.174 |
| SRR8400027 | Control - Root | 24.621 |