Gene detail information of Glyur000409s00019942 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23325.1 | 4.00E-12 | Splicing factor 3B subunit 5/RDS3 complex subunit 10 |
| NR | XP_004509873.1 | 1.20E-15 | PREDICTED: uncharacterized protein At4g14342-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9LW64|SF3BA_ARATH | 1.00E-15 | Uncharacterized protein At3g23325 |
| trEMBL | tr|K7L9M2|K7L9M2_SOYBN | 2.00E-15 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G40200.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00409 | 105752 | 107862 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000409s00019942.1 | PF07189.6 | SF3b10 | 5 | 30 | 6.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.408 |
| SRR1783600 | control | 67.352 |
| SRR1783602 | moderate drought stress | 41.958 |
| SRR1811619 | moderate drought stress | 41.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.672 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.711 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.483 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.446 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.467 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 115.365 |
| SRR2868004 | Drought Stress (root) | 136.939 |
| SRR2967015 | Control (root) | 115.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 84.103 |
| SRR9715740 | Leaf | 93.329 |
| SRR9715741 | Leaf | 93.920 |
| SRR9715739 | Root | 101.676 |
| SRR9715742 | Root | 61.859 |
| SRR9715743 | Root | 67.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.369 |
| SRR8749028 | MeJA induced 9h | 39.621 |
| SRR8749029 | MeJA induced 9h | 56.976 |
| SRR8749030 | Uninduced | 48.624 |
| SRR8749031 | Uninduced | 24.743 |
| SRR8749032 | Uninduced | 40.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 100.599 |
| SRR8400027 | Control - Root | 97.991 |