Gene detail information of Glyur000409s00019939 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02650.1 | 3.00E-137 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004502080.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|P0C896|PP209_ARATH | 8.00E-173 | Pentatricopeptide repeat-containing protein At3g02650, mitochondrial (Precursor) |
| trEMBL | tr|A0A072V0E2|A0A072V0E2_MEDTR | 0 | PPR containing plant protein {ECO:0000313|EMBL:KEH35176.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00409 | 93014 | 94771 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000409s00019939.1 | PF01535.15 | PPR | 385 | 412 | 0.13 |
| Glyur000409s00019939.1 | PF01535.15 | PPR | 419 | 448 | 0.082 |
| Glyur000409s00019939.1 | PF01535.15 | PPR | 454 | 481 | 0.091 |
| Glyur000409s00019939.1 | PF01535.15 | PPR | 488 | 518 | 1.30E-08 |
| Glyur000409s00019939.1 | PF01535.15 | PPR | 532 | 554 | 0.68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.386 |
| SRR1783600 | control | 20.434 |
| SRR1783602 | moderate drought stress | 12.506 |
| SRR1811619 | moderate drought stress | 12.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.778 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.845 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.384 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.346 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.813 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.948 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.124 |
| SRR2868004 | Drought Stress (root) | 19.592 |
| SRR2967015 | Control (root) | 15.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.549 |
| SRR9715740 | Leaf | 13.127 |
| SRR9715741 | Leaf | 7.047 |
| SRR9715739 | Root | 5.767 |
| SRR9715742 | Root | 16.134 |
| SRR9715743 | Root | 13.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.749 |
| SRR8749028 | MeJA induced 9h | 7.427 |
| SRR8749029 | MeJA induced 9h | 3.779 |
| SRR8749030 | Uninduced | 1.946 |
| SRR8749031 | Uninduced | 0.450 |
| SRR8749032 | Uninduced | 0.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.698 |
| SRR8400027 | Control - Root | 12.726 |