Gene detail

Gene detail information of Glyur000409s00019931.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32260.1	4.00E-113	phosphorylcholine cytidylyltransferase
NR	XP_004502085.1	0	PREDICTED: choline-phosphate cytidylyltransferase B-like [Cicer arietinum]
COG	YP_004672440.1	2.00E-20	hypothetical protein SNE_A20720 [Simkania negevensis Z]
Swissprot	tr\|F4JJE0\|CCT2_ARATH	2.00E-159	Choline-phosphate cytidylyltransferase 2
trEMBL	tr\|A0A072VAH1\|A0A072VAH1_MEDTR	0	Choline-phosphate cytidylyltransferase {ECO:0000313\|EMBL:KEH35195.1}

Sequence

Transcript Sequence

>Glyur000409s00019931.1
ACCAACCAACTGATTTAAGGAAAGAAAGAAAGAATAAATAGTGGCGAAAAATGAAAATAGAAGGCGGAATTAACGCAGAGTCGCAAGTTAGGAAGAAAAAAACAAAAAAGAGAAGGCAGAGTGGGNAATGATTCGATACGGCAAGTAACAACATGGCAACGGCCGCTGCAACTCCTCCGCCACAGGACCGTCCCGTTCGCGTCTACGCCGATGGCATCTACGATCTCTTCCACTTCGGCCACGCTCGCTCCCTCGAACAAGCCAAAAAATCATTTCCGAACACGTACCTTCTGGTTGGATGCTGCAGCGACGCGGTGACACACCAGTACAAAGGCAAAACCGTCATGACCGAGGATGAACGTTACGAGTCCCTCCGCCACTGCAAATGGGTGGATGAAGTGATTCCGGATGCACCATGGGTTATCAATCAAGAGTTTCTCGACAAACACAACATTGACTATGTCGCTCACGACTCTCTTCCATATGCTGATGCCAGTGGTGCTGCAAATGATGTTTATGAATTTGTTAAGGCCGTTGGGAAATTTAAGGAAACACAACGGACTGAAGGGATATCTACATCGGATTTGATAATGAGGATTGTCAAAGATTATAATCAGTATGTGCTGCGGAACTTGGACCGTGGGTACTCAAGAAAAGAGCTCGGTGTGAGCTATGTTAAGGAAAAACGACTGCGGGTGAACAGGAGGCTGAAAACTTTGCAAGAGAAAGTAAAAGAACAGCAAGAAAAGATCCAAACTGTTGCAAAGAATGCTGGTATGCATCGGAATGAGTGGGTGGAAAATGCTGATCGTTTGGTTGCTGGATTTCTAGAAATGTTTGAAGAAGGTTGCCACAAGATGGGGACTGCCATTAGGGATCGAATTCAAGAGAGCTTAAGAGGNCAACCATCAAGTGATGCCTTACTTGTGCAAAATGGCGAGGATGATGAGGATGAAGAGTATTATGATGATGATGAGTATAGTGATGAAGAATATTTTGAAGAGTATTTTGATGATGATGAGCTTAATCCCCAAAATAATGGAAAAGACAAGAACAAAAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00409	38538	42824	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00968	PCYT1	EC:2.7.7.15	Glycerophospholipid metabolism	map00564
			Phosphonate and phosphinate metabolism	map00440
			Choline metabolism in cancer	map05231

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000409s00019931.1	PF01467.21	CTP_transf_2	18	146	2.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.975
SRR1783600	control	5.899
SRR1783602	moderate drought stress	5.874
SRR1811619	moderate drought stress	5.742

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.804
DRR006520	Root Summer glycyrrhizin high producing strain	14.302
DRR006521	Root Winter glycyrrhizin high producing strain	27.022
DRR006522	Root Winter glycyrrhizin high producing strain	26.575
DRR006523	Root Summer glycyrrhizin low producing strain	19.743
DRR006524	Root Summer glycyrrhizin low producing strain	19.010
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.704
SRR2868004	Drought Stress (root)	8.504
SRR2967015	Control (root)	5.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.500
SRR9715740	Leaf	22.169
SRR9715741	Leaf	21.660
SRR9715739	Root	0.892
SRR9715742	Root	5.721
SRR9715743	Root	5.442

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.000
SRR8749028	MeJA induced 9h	13.521
SRR8749029	MeJA induced 9h	8.804
SRR8749030	Uninduced	35.019
SRR8749031	Uninduced	21.322
SRR8749032	Uninduced	13.602

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.836
SRR8400027	Control - Root	9.898