Gene detail

Gene detail information of Glyur000409s00019929

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12750.1	8.00E-72	zinc transporter 1 precursor
NR	XP_010260697.1	0	PREDICTED: zinc transporter 8-like [Nelumbo nucifera]
COG	YP_007467549.1	7.00E-13	putative divalent heavy-metal cations transporter [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|O23039\|ZIP5_ARATH	4.00E-109	Zinc transporter 5 (Precursor)
trEMBL	tr\|F6HFT5\|F6HFT5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51031.1}

Sequence

Transcript Sequence

>Glyur000409s00019929.1
ATGGAAATTAATAGGCACCTCTTTGTTTTTTCTATCTTCATGCTCCTAATTGTACTCCCAACTCTAGTAGTTGCAGAATGCACTTGTGACGAAGAAGACGAAGACAGGGACAAATCCAAGGCTCTAAGGTACAAAATAGCCGCTTTGCTATCGATCCTAGTGGCGAGTGCAATAGGTGTTTGTATCCCACTCCTTGGAAAAGTGATACCCGCATTAAGCCCCGAGAAAGATATATTCTTCATCATTAAGGCCTTTGCTGCGGGTGTGATATTGTCTACGGGTTTCATTCATGTGTTGCCTGATGCCTTTGAGAATCTNANNTCGCCGNGTCTAGATNAACATCCATGGGGTGATTTTCCCTTCACTGGGTTTGTGGCTATGTGTACNGCCATGGGGACACTCATGGTTGATACTTATGCCACCGCTTATTTTCAGAAACACCACTTCAATANGGCACAGACCGCCGCGGATTTGGAGAAGGAAGCAACAGAACATGAAGGGCATGTGCATGTGCTGGAGTTGGGGATTATTGTTCACTCTGTTATAATTGGAATTTCTCTGGGAGCTTCAGAGAGTCCCAAAACGATAAGGCCACTTGTTGCTGCGCTGACTTTTCATCAGTTCTTTGAGGGAATGGGGCTTGGNAGTTGTATAACTCAGGCAAATTTCAAGAGGGCATCTGTCGCAATCATGGGGTTGTTCTTTGCTTTGACTACTCCAGTAGGGATTGGAATTGGCATTGGGATCAGCAGTAATTACGACGAGAACAGTCCAACAGCCCTTATTGTTGAAGGAATCTTCAACGCTGCCTCAGCTGGGATCTTAATCTACATGGCACTTGTGGATCTTCTTGCTGCTGATTTCATGAATCCAAGGATGCAAAAGAGTGGTAGGCTTAGATTAGGATCCAATATCTCTCTTCTGTTAGGAGCTGCACTTGCGGAGTGTACATGTGATGAAGAAGATGAAGACAGGGACAAATCCAAAGCTCTGAGGTACAAAATAGCTGCNTTGGCATCAATACTAGTGGCGAGTGCAATTGGTGTTTGTATCCCACTCCTTGGGAGAGTGATACCCGCATTAAGCCCCGAGAAGGATATCTTCTTTATCATTAANGCTTTTGCCGCCGGTGTGATATTGTCTACNGGTTTCATTCATGTGTTGCCGGACGCCTTTGAGAATCTCACCTCGCCGTGTCTAGATGAACATCCATGGGGTGACTTTCCCTTCACTGGGTTTGTGGCTATGTGTACCGCCATGGGAACCCTCATGGTTGAAACTTATGCCACTTCTTATTTTCAGAAACACCACGCAACCATAGATGTGGAGAAGGAAACTGCAGAGGTGCATGTTCATACCCATGCAACACTTTCCGATCACTCCTCAGAACTTCTTCGNCATAGGGTCATATCACAGGTGTTGGAGATGGGGATTATTGTTCATTCTGTTATAATAGGGATTACTCTGGGAGCTTCAGAGAGTCCCAAAACNATAAGNCCACTGGTTGCTGCGTTGACTTTTCATCAGTTCTTTGAGGGCATGGGACTTGGAAGTTGTATAACTCAGGCAAATTTCAAGAGGGCCTCAGCAGCAATCATGAGATTGTTCTTCGCTTTGACTACTCCAATAGGGATTGGAATTGGCATTGGGATCNCTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00409	7361	18556	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

GO:0071577 zinc II ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005385 zinc ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000409s00019929.1	PF02535.17	Zip	148	313	1.10E-39
Glyur000409s00019929.1	PF02535.17	Zip	333	551	2.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.110
SRR1783600	control	0.108
SRR1783602	moderate drought stress	0.137
SRR1811619	moderate drought stress	0.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.457
DRR006520	Root Summer glycyrrhizin high producing strain	0.399
DRR006521	Root Winter glycyrrhizin high producing strain	0.336
DRR006522	Root Winter glycyrrhizin high producing strain	0.325
DRR006523	Root Summer glycyrrhizin low producing strain	0.101
DRR006524	Root Summer glycyrrhizin low producing strain	0.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.706
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.129
SRR2868004	Drought Stress (root)	57.194
SRR2967015	Control (root)	35.620

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	88.848
SRR9715740	Leaf	185.357
SRR9715741	Leaf	124.705
SRR9715739	Root	1.995
SRR9715742	Root	1.505
SRR9715743	Root	3.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.282
SRR8749028	MeJA induced 9h	15.677
SRR8749029	MeJA induced 9h	5.635
SRR8749030	Uninduced	7.065
SRR8749031	Uninduced	1.362
SRR8749032	Uninduced	5.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.519
SRR8400027	Control - Root	0.763