Gene detail information of Glyur000408s00029649 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41050.1 | 1.00E-34 | PQ-loop repeat family protein / transmembrane family protein |
| NR | AFK47806.1 | 1.60E-77 | unknown [Medicago truncatula] |
| trEMBL | tr|I3T5L4|I3T5L4_MEDTR | 6.00E-78 | Uncharacterized protein {ECO:0000313|EMBL:AFK47806.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00408 | 28313 | 32863 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000408s00029649.1 | PF04193.9 | PQ-loop | 40 | 96 | 5.80E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.947 |
| SRR1783600 | control | 4.568 |
| SRR1783602 | moderate drought stress | 6.839 |
| SRR1811619 | moderate drought stress | 6.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.049 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.411 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.863 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.994 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.933 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.513 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.200 |
| SRR2868004 | Drought Stress (root) | 4.430 |
| SRR2967015 | Control (root) | 5.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.129 |
| SRR9715740 | Leaf | 0.226 |
| SRR9715741 | Leaf | 0.107 |
| SRR9715739 | Root | 0.543 |
| SRR9715742 | Root | 1.609 |
| SRR9715743 | Root | 0.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.499 |
| SRR8400027 | Control - Root | 24.083 |