Gene detail

Gene detail information of Glyur000407s00023577

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70230.1	4.00E-116	TRICHOME BIREFRINGENCE-LIKE 27
NR	XP_003517740.1	0	PREDICTED: protein YLS7-like [Glycine max]
Swissprot	tr\|O04523\|TBL27_ARATH	5.00E-138	Protein ALTERED XYLOGLUCAN 4
trEMBL	tr\|K7K1K6\|K7K1K6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G04151.1}

Sequence

Transcript Sequence

>Glyur000407s00023577.1
AAAAGGATAACAAGGCTTATGAGAACTCATGTGACTACTCTAATGGAGATTGGGTCCATGACATGAGAGGCCCTTTATACAATGTCACAACATGTGGCACGATCAAAGAGAGCGAGAAATGCATCGTCAATGGAAGACCTGACTTTGGCTACCTTTACTGGAGATGGCAACCCAANGAATGCANTCTTCCAAGGTTTGAACCAAAAACTTTCCTCCAACTAGTTAACAACAAGCACATAGCTTTTGTTGGGGACTCTTTGGCTAGGAACCAATTAGAGTCNCTTCTTTGCATGTTAGCCACATCTTCAACCCCTTCCCTTGTCTACCGAAATGGAAAGGACAACAAGTTCCGTAAATGGCACTTCCCTTCTCACAATGCAACCTTCTCCTTGTATTGGTCACCATTTCTTGTGCAAGGTGTTGAACTTGACAAGTCAAATGAAGGGTCATACTATAACACAATGCATTTGGATATTGTCGATGAGAGGTGGGCAAGGGATGTGGACAAAATGGACTTGGTTGTAGTTTCATTTGGGCATTGGTTTTTGCTTCCTTCGGTTTACTACGAGGGAGGTTCAGTTCTAGGTAGCCTAAATTGTCCTGATCTTAATCACACTCAGGTTGATTTCTATGACCCGTTGAGGAAGGCTTTGAGAACTACCCTTAATAGCATAATTGAGAGGAAAAGAGGTATAGAGGGGAATGGAAAAATTGATGTGATTGTGAAGACATTTTCACCTGCTCATTTTGAGGGGGATTGGGATAAGGCTGGTACTTGTTCAAAGACCAAGCCTTATAAGAAGGGGGAGAAGTTACTTGGNGGAATGGACGGTGAGATTAGGAGGATTGAGATGGAGGAAGTGGAAAGTGCTAAGGAGAAAGCCAATGAGTATTATTCTGGAGGGTTTAGGTTTGAGGTACTTGATGTAACAGAATTGGCATTGTTGAGACCTGATGGCCATCCTGGTCCTTATATGAACCCTTTTCCATTTGCTAAAGGGGTTCCAGAGCGTGTGCAGAATGATTGTGTTCATTGGTGCTTGCCTGGGCCTATAGATACATGGAATGAGATCTTTCTGGAGATGATGAAGAAGTGGGAGGAGCATCCCCGGAGAGAAGGAGATAAACCTCTCTCCCTCACCAAGACACTTCTTCCATGGACTCTGCTTCCCATAGCTCTGCTTTGTTTATACTTTTACCATAATCTACCTTTTTCTCCATCTCCAAAAACTAATTTTACTAATTCCAACCCCATCAACATCACTTCCCACTTTTCTCTTCCTGCTTCTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCAGAAAAGGAAAAGGCATATGAGAACAAATGTGACTACTCTAATGGTGAATGGGTCCAAGACAATAGAGGCCCTTTGTACAATGAAACAACATGTGGTAGGATCAAAGAAGGAAGAAAGTGCATCACACATGGAAGGCCTGACTCTGGCTATCTCTATTGGANATGGAAACCAAGTCAATGCCATCTTCCAAGGTTTGATCCAAACACTTTTCTCCAACTCATTAACAACAAGCACATAGCTTTTGTTGGGGACTCTATGGCCAGGAACCAATTAGAGTCCCTTCTTTGTATGTTATCCACTGCCTCAACCCCTGACCTTGTCTACCAAAATGGTGAGGAGAACCAATTCTACAGGTGTCACTTTTCTTCACACAATGCAACCATTTCCTTGTATTGGTCTCCATTTCTTGTGCAAGGTGTTGAGAGATCAAGCACAAGGCCAAACAATGAGCTTTACTTGGATCATGTTGATGAGAGATGGGCAAAAGACATGGATCAAANGGACTTGATTGTGCTTTCATTTGGGCATTGGTTTTTGCTTCCTGCAGTTTACCATGAGGGTGATTCAGTCTTGGGTTGTCATTACTGTCCTGNTCTTAATCACACTGAGATTGGGTTTTATGATGTGTTAGGAAAGGCTTTAAAGACTACCCTTAATAGCATAATTGAGAGGAGGGGAGCTAAAGGGAATGGAATTGATGTAGTTGTGACAACATTCACACCCCATCATTTTGAAGGTGATTGGGATAAGGCTGGTGCTTGTCCAAAGACNGTGCCTTATAGAAATGGGGAGANGCAACTTGAAGGAATGGATGCTGAGATGAGAAAGAATGATTGTGTTCATTGGTGCTTGCCTGGGCCTATAGACACATGGAATGAGATCTTTTTGGAGATGATGAAGAAGTGGGAGAAACAACCAAGGAGTGAAGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00407	142527	150005	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0010411 xyloglucan metabolic process

cellular_component
GO:0005794 Golgi apparatus

molecular_function
GO:0016413 O-acetyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000407s00023577.1	PF14416.1	PMR5N	3	40	2.00E-11
Glyur000407s00023577.1	PF13839.1	PC-Esterase	42	343	9.70E-58
Glyur000407s00023577.1	PF14416.1	PMR5N	429	482	4.80E-19
Glyur000407s00023577.1	PF13839.1	PC-Esterase	483	695	2.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.986
SRR1783600	control	3.829
SRR1783602	moderate drought stress	2.382
SRR1811619	moderate drought stress	2.285

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.887
DRR006520	Root Summer glycyrrhizin high producing strain	1.909
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.048
DRR006523	Root Summer glycyrrhizin low producing strain	0.700
DRR006524	Root Summer glycyrrhizin low producing strain	0.701
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.618
SRR2868004	Drought Stress (root)	3.619
SRR2967015	Control (root)	3.383

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.083
SRR9715740	Leaf	2.765
SRR9715741	Leaf	2.809
SRR9715739	Root	6.608
SRR9715742	Root	8.640
SRR9715743	Root	8.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.758
SRR8749028	MeJA induced 9h	2.574
SRR8749029	MeJA induced 9h	1.665
SRR8749030	Uninduced	1.592
SRR8749031	Uninduced	0.251
SRR8749032	Uninduced	0.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.707
SRR8400027	Control - Root	11.726