Gene detail information of Glyur000407s00023567 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40240.1 | 7.00E-60 | nodulin MtN21 /EamA-like transporter family protein |
| NR | XP_006484313.1 | 0 | PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis] |
| Swissprot | tr|Q94JU2|WTR18_ARATH | 2.00E-76 | WAT1-related protein At3g28050 |
| trEMBL | tr|G7K2R8|G7K2R8_MEDTR | 3.00E-177 | Nodulin MtN21/EamA-like transporter family protein {ECO:0000313|EMBL:AES96243.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00407 | 80431 | 92400 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000407s00023567.1 | PF00892.15 | EamA | 24 | 151 | 3.10E-07 |
| Glyur000407s00023567.1 | PF00892.15 | EamA | 195 | 321 | 5.60E-06 |
| Glyur000407s00023567.1 | PF00892.15 | EamA | 408 | 535 | 1.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.530 |
| SRR1783600 | control | 1.472 |
| SRR1783602 | moderate drought stress | 1.482 |
| SRR1811619 | moderate drought stress | 1.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.859 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.003 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.254 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.249 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.561 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.336 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.520 |
| SRR2868004 | Drought Stress (root) | 6.402 |
| SRR2967015 | Control (root) | 4.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.630 |
| SRR9715740 | Leaf | 9.553 |
| SRR9715741 | Leaf | 6.440 |
| SRR9715739 | Root | 0.774 |
| SRR9715742 | Root | 5.935 |
| SRR9715743 | Root | 5.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.030 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.022 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.493 |
| SRR8400027 | Control - Root | 7.765 |