Gene detail

Gene detail information of Glyur000407s00023565

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26830.1	0	Threonyl-tRNA synthetase
NR	XP_007157476.1	0	hypothetical protein PHAVU_002G072800g [Phaseolus vulgaris]
COG	YP_004653556.1	3.00E-159	threonyl-tRNA synthetase [Parachlamydia acanthamoebae UV-7]
Swissprot	tr\|O04630\|SYTM_ARATH	0	Threonine--tRNA ligase, mitochondrial (Precursor)
trEMBL	tr\|V7CJK2\|V7CJK2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29470.1}

Sequence

Transcript Sequence

>Glyur000407s00023565.1
ATGCTATGCTCTCTAATCCGTTTGCGCCGTTACGCTTCTTCGACCTCACTCCTTCTCCACCTCCACCTCAGTACTACTACTAGTAGTAACCGCTTCTTCTCTTCTAGCTCCGCCGCCATGGTTGCTCACGCGAAGGACGAAGCTTACCTGAGCACGGCGATACCGAAGCGAATCCAGTTGTTCGAGGCGATTCAGGCGGAACAGCGTACTCTCCGGCTGTCACTGTCGCCGGATCCGATAAAGGTGACACTCCCCAACGGCAACGTGAAGGAATGCAACAATTCGACGACGACGAAGGCTCTTGAGGTGGAGTATGGATGCAAGCTCTGCATTGGGCCCTGCACAACCAGAGGAGAGGGATTCTATTATGATGCGTTTTATGGTGACTTGGGTCTGAATGATGATCACTTTAAACAAATTGAGGCTGGGGCATTGAAGGCTGTTGGGGAAAAACAACCCTTTGAGCGCATTGAAGTGACACGCGATCAGGCGCTTGAGATGTTTTCGGATAATAAGTCGAAATTATCAATGATTTGCCCGCTGACAAGACTATCACAGTATACAGATGTGGTCCCCTTGTTGATTTGTGTCGTGGACCACATATACCNAATACATCCTTTGTCAAAGCAATTGCATGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGAGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGGTTCGGCTAGAGGAGGCTAAGAAGTATGATCACAGGATTTTGGGTGTGAAACAGGAGCTCATTCTTCATCATGAATGGAGCCCGGGAAGCTGGTTTTTTCTTCCACATGGTGCTCGGATCTACAACAAACTCATGGAGTTCATTCGAAATCAGTACAGAGACAGGGGCTATCAAGAGGTCATATCCCCAAATGTATTCAACATGGATCTGTGGGTGCAATCTGGTCATGCTGCTAATTATAGAGAGGATATGTTTATCTTAGAGATTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCTTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTCCGCTTTGCTGATTTTGGGGTTTTGCATCGAAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACACATTTTCTGCAGGGAGTCTCAGATAAAGGATGAAGTGAGAAATGCCCTAAATTTCATCGATTATGTCTATCAAATATTTGGTTTCACATATGAGCTGAAACTTTCAACGAGGCCAGAGAAATACCTAGGAAATGTGGAAACATGGGAGAAGGCTGAAAATGCTCTCAAGGAAGCTTTGGATGAGTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGCCCAAAAATTGACATCAGTGTNTCTGATGCATTGAGTAGGAAATTCCAGTGTGCGACTTTGCAGCTTGATTTCCAGCTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATACACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCCATACTTTTAGAGCATTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGCCAAGCTATTGTGTGCCCTGTATCAGAGAAATCACAAGCTTATGCACTGCAGGTGCGAGATCAGATCCACCAAGCAGGGTATCACGNAGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTACGAGAAGCTCAGTTAGCACAGTACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACGGGACAGGTGAGTGTACGAGTTAGAGATAAGGCAGACCATAGTGTTATGAGTATTGAGAACCTACTCAGACACTTCAGAGACGAAATTGCAGCTTTCCATTGATACTTTGATTTTGATTGTGAAAACTGTTAAAGAAAGTTTATACCCCCGATTGCTTTCTGGTTGTACACATTTGTGTGCATTTATGTTTCAACCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00407	44157	52675	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01868	TARS, thrS	EC:6.1.1.3	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006435 threonyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004829 threonine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000407s00023565.1	PF00587.20	tRNA-synt_2b	285	447	1.20E-44
Glyur000407s00023565.1	PF03129.15	HGTP_anticodon	553	642	1.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.864
SRR1783600	control	57.631
SRR1783602	moderate drought stress	51.462
SRR1811619	moderate drought stress	49.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.818
DRR006520	Root Summer glycyrrhizin high producing strain	70.389
DRR006521	Root Winter glycyrrhizin high producing strain	31.227
DRR006522	Root Winter glycyrrhizin high producing strain	30.162
DRR006523	Root Summer glycyrrhizin low producing strain	57.908
DRR006524	Root Summer glycyrrhizin low producing strain	57.746
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.994
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	116.586
SRR2868004	Drought Stress (root)	84.847
SRR2967015	Control (root)	80.695

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.337
SRR9715740	Leaf	67.542
SRR9715741	Leaf	64.029
SRR9715739	Root	26.581
SRR9715742	Root	60.217
SRR9715743	Root	51.260

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	186.616
SRR8749028	MeJA induced 9h	115.591
SRR8749029	MeJA induced 9h	127.612
SRR8749030	Uninduced	13.030
SRR8749031	Uninduced	9.911
SRR8749032	Uninduced	15.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	95.521
SRR8400027	Control - Root	89.197