Gene detail information of Glyur000407s00023561 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70280.2 | 3.00E-143 | NHL domain-containing protein |
| NR | XP_006573048.1 | 0 | PREDICTED: uncharacterized protein LOC100799483 [Glycine max] |
| COG | YP_007225717.1 | 1.00E-15 | NHL repeat protein [Echinicola vietnamensis DSM 17526] |
| trEMBL | tr|I1J5A9|I1J5A9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G03880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00407 | 6538 | 10639 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000407s00023561.1 | PF01436.16 | NHL | 147 | 172 | 0.0002 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.805 |
| SRR1783600 | control | 15.783 |
| SRR1783602 | moderate drought stress | 6.196 |
| SRR1811619 | moderate drought stress | 6.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.498 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.529 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.279 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.343 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.640 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.282 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.664 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.603 |
| SRR2868004 | Drought Stress (root) | 6.096 |
| SRR2967015 | Control (root) | 8.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.064 |
| SRR9715740 | Leaf | 0.952 |
| SRR9715741 | Leaf | 1.402 |
| SRR9715739 | Root | 2.743 |
| SRR9715742 | Root | 3.647 |
| SRR9715743 | Root | 2.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.631 |
| SRR8749028 | MeJA induced 9h | 2.337 |
| SRR8749029 | MeJA induced 9h | 2.020 |
| SRR8749030 | Uninduced | 0.028 |
| SRR8749031 | Uninduced | 0.068 |
| SRR8749032 | Uninduced | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.516 |
| SRR8400027 | Control - Root | 19.753 |