Gene detail information of Glyur000406s00019714 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18430.2 | 2.00E-48 | Calcium-binding EF-hand family protein |
| NR | XP_004486642.1 | 1.87E-68 | PREDICTED: calcineurin subunit B-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|B7FH75|B7FH75_MEDTR | 2.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK39575.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00406 | 16733 | 19747 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000406s00019714.1 | PF13499.1 | EF-hand_7 | 38 | 100 | 3.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.340 |
| SRR1783600 | control | 5.814 |
| SRR1783602 | moderate drought stress | 6.145 |
| SRR1811619 | moderate drought stress | 5.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.019 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.500 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.339 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.723 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.170 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.954 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.332 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.640 |
| SRR2868004 | Drought Stress (root) | 34.310 |
| SRR2967015 | Control (root) | 26.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.733 |
| SRR9715740 | Leaf | 12.815 |
| SRR9715741 | Leaf | 10.794 |
| SRR9715739 | Root | 7.493 |
| SRR9715742 | Root | 9.557 |
| SRR9715743 | Root | 8.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.128 |
| SRR8749028 | MeJA induced 9h | 8.913 |
| SRR8749029 | MeJA induced 9h | 15.065 |
| SRR8749030 | Uninduced | 12.634 |
| SRR8749031 | Uninduced | 7.443 |
| SRR8749032 | Uninduced | 10.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.704 |
| SRR8400027 | Control - Root | 24.765 |