Gene detail

Gene detail information of Glyur000405s00021271

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G06744.1	5.00E-99	Leucine-rich repeat (LRR) family protein
NR	KHN22492.1	1.38E-172	Hypothetical protein glysoja_041167 [Glycine soja]
COG	YP_006435664.1	3.00E-11	surface protein 26-residue repeat-containing protein [Flexibacter litoralis DSM 6794]
Swissprot	tr\|Q8W3M4\|Y4744_ARATH	2.00E-120	Uncharacterized protein At4g06744 (Precursor)
trEMBL	tr\|K7M5N3\|K7M5N3_SOYBN	6.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G09410.2}

Sequence

Transcript Sequence

>Glyur000405s00021271.1
ATGAATAGCAATAGCNATAGCATTAGCATCCCTGGAAGAAAATTTTTGGTCTCATCTTTGTGCATGCTCTTGGTGTTCCTTCCTGTGTACACGTCAGCAACACATGACAAAGGTTGCAAAAATCATCAATTGGACACAACAACAACAACATCACCATGTCAAAAAAATTCAAAAGCCACTAAATTTGCAGCTCCATCTTTGCCTCTCAAAACAGAATCCCTTGTATTTGCAGACCAAAGACTCTCAGTAGTGTACCCAGTGATTCAAAAATTCAAGTCCATCATCAATTCAGATCCTTTAGGAGTTACAAAATCATGGGTAGGCTCAGATATATGCAGTTACAAAGGGTTCTATTGTGATAACCCACCAGATAATACCTCTGCCATTGCCTTGGCCTCAATTGACTTCAATGGTTTCCAACTTGGTGCTTCTACCCTTGATGGGTTCATTGATAAACTCCCTGATATTGCTCTCTTCCATGCAAATTCCAACAATTTCAAAGGCACAATCTCCCCCCAAATCTCCAAGCTCCCTTACCTTTATGAGCTTGATGTGAGTAACAACCAATTGTCAGGTCCATTCCCAATTTCTGTTCTTGGCATGGGCACACTAACATTCTTGGACATAAGGTTCAATTCCTTCTCTGGGGCAGTTCCACCTCAAATATTCAATCAAAATCTCCAAGTCCTATTCATCAATGACAATTTCTTCACTCAGGACAACCAGCTCACAGGTCCTTTACCATTCTCTCTGAGTTGCCTTGAGAAGGTGGAGCTGCTCAATTTGGCTGGTAATTTGCTCTATGGAATGGTGCCAGAGGTGGTGTGTGCAGGGTTGAGGAATTTNGTCAACTTTTCACTGTCAGATAACTATTTCACCCATGTGGGGCCCATGTGTAGGTTCTTAATCCAGAGAGGGGTTCTTGATGTTAGGAACAATTGTATTCCTGATCTACCATTCCAGAGATCAGTGGTTGAGTGTGCAGGTTTCTTTGCACAACCCAGGATGTGTCCTTTCATGTGGTTTCNTGGTTTCTTCCCTTGTAAGCTTCCATTCCAAAACTCATCCCCAGTTTCTTCTTCCATTCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00405	166565	168051	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000405s00021271.1	PF08263.7	LRRNT_2	88	120	0.00026
Glyur000405s00021271.1	PF13504.1	LRR_7	178	191	2.9

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.171
SRR1783600	control	44.131
SRR1783602	moderate drought stress	94.696
SRR1811619	moderate drought stress	93.555

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.492
DRR006520	Root Summer glycyrrhizin high producing strain	19.985
DRR006521	Root Winter glycyrrhizin high producing strain	0.094
DRR006522	Root Winter glycyrrhizin high producing strain	0.099
DRR006523	Root Summer glycyrrhizin low producing strain	7.614
DRR006524	Root Summer glycyrrhizin low producing strain	7.517
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.124
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.263

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.047
SRR2868004	Drought Stress (root)	27.239
SRR2967015	Control (root)	47.994

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.600
SRR9715740	Leaf	0.498
SRR9715741	Leaf	0.372
SRR9715739	Root	9.272
SRR9715742	Root	15.249
SRR9715743	Root	10.892

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.116
SRR8749029	MeJA induced 9h	0.174
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.104

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.480
SRR8400027	Control - Root	37.930