Gene detail

Gene detail information of Glyur000405s00021263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G06536.1	2.00E-43	SPla/RYanodine receptor (SPRY) domain-containing protein
NR	XP_007160874.1	0	hypothetical protein PHAVU_001G024000g [Phaseolus vulgaris]
trEMBL	tr\|V7CU06\|V7CU06_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32868.1}

Sequence

Transcript Sequence

>Glyur000405s00021263.1
ATGGGTCAATGGATACATGTTGCAGTTGTGGCAGCCTCAGTGGGATGTGTTTCAACCCTTTTGCTGGTTTTCATTTGGCGATTGTGCAATCATCACAAGAAAGAGCAAAGGAACTTTGTTGAACCAAATAGCTTGACCAGAAGAGAGAGCCTTCAACCAGCTATCATCAACCATCAATTTGATCAAAGTAGCAACAAGAATAGAGGGAATTTCTATGTTCTTCATAAAGGGGTATCTGAAAGAAAAGACCTTTTCAACTGGGGTGATCACCCTTATCTAGCTGCTGATGCTGTTGAAAATGGTTGGTCAAGATTTGCTTTCACAAGCTACAAGAGCAGCAACAACAACAACATGTCATATCCTAATTCAAAGAGATCAACATTAACAACACCATCAACACTTTTAGGAGCATGTGCAGGTGGTGATGAATATGGGAGAGAAATTACTGAGGCTGAGATAAGCTGGGAAGTTTGTCAAGGATCAAATGAGTTTATGCAGAAGATTAGGCTCAATCCTGGGTTGAAAAGGGTCTCTTTTCATCATCCAAACAACAACAACTCTTCTTCCATGATGATGAGTGTTGCTTCTGTCATTAGGACTTCTCTTCCTCTTCCTGGNCCTCCTTTGGGGAACCATGCATTCCCACAAGAAGCATATTTTGAGATTACCATATTGTATTCTCAATGTGAGGATCATGAATCTGTGGTGGGAAAGANAGAAGGGGAGAAGACAAAACTCCTTGTTCAAGATGCTATAGGTGATTTGGACAATGTTGAAGAAATGAAAGGTGAAAGAAAAGAGGGTGGGAAGAGTGGATCTGTGATGTTCTCAATGGGGTTAACAGCTGGAGGAGCTGTTCCTCNAAGAGTTCCAGGAACTTACCCCAGNAGCATCGGGTTCAACTCNAATGGTTCTGTTTTTCTTGATGGAATGAAACTTGTATTGGAGTCTGAAAAGGCACAATGGGTTGGAACTGATACAGTTATTGGCTGTGGGTTTGATCCAAGGCAAAAAAAAGTTTTCTTCACATTAGACTCAGAATTGGTGCATGTAATTCACTGCCACTCAGAGGAATTTGGCACTCCACTGTGTCCAACACTGGCTGCAAATATAGACATTGTGGTTTTGGTTAATTTTGGACAAAGTGCATTCAAATATGCACCTGCTAATGCACAAAGAACACCAAATCCATGCTTCATAGCCCCACTTGTGAATTCCCCTGCTGCTACACTTGGCTTTGATGACAGTAAGGAGCTCTTTTCCATGGGAAGGATTGATTCTCAGTGGCACAATAGGTCTTCAACCAAAGGAAATCACAACAATGGGAATAACAATAATCGAGCCTTCGATTTTGATGAGGAGTCTGAGGCTGATCTATTTGAAATTGTGTTGGATGGTTCTGAAAAATCCCAGATTTCTTTGGCAGCTAATGAGAAAAAACCACATTGTAGTCCCAGTGCTAAAACAAACAAGTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00405	120535	123425	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000405s00021263.1	PF00622.23	SPRY	289	381	1.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.504
SRR1783600	control	1.468
SRR1783602	moderate drought stress	1.832
SRR1811619	moderate drought stress	1.798

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.749
DRR006520	Root Summer glycyrrhizin high producing strain	4.510
DRR006521	Root Winter glycyrrhizin high producing strain	6.893
DRR006522	Root Winter glycyrrhizin high producing strain	6.608
DRR006523	Root Summer glycyrrhizin low producing strain	2.204
DRR006524	Root Summer glycyrrhizin low producing strain	2.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.691
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.677
SRR2868004	Drought Stress (root)	17.202
SRR2967015	Control (root)	11.039

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.425
SRR9715740	Leaf	1.191
SRR9715741	Leaf	2.115
SRR9715739	Root	1.240
SRR9715742	Root	3.402
SRR9715743	Root	2.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.460
SRR8749028	MeJA induced 9h	9.537
SRR8749029	MeJA induced 9h	5.540
SRR8749030	Uninduced	16.385
SRR8749031	Uninduced	21.598
SRR8749032	Uninduced	13.172

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.628
SRR8400027	Control - Root	5.430