Gene detail information of Glyur000405s00021253 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36930.1 | 1.00E-23 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004499048.1 | 5.35E-91 | PREDICTED: transcription factor SPATULA-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FUA4|SPT_ARATH | 1.00E-36 | Transcription factor SPATULA |
| trEMBL | tr|V7CRW0|V7CRW0_PHAVU | 2.00E-89 | Uncharacterized protein {ECO:0000313|EMBL:ESW32859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00405 | 30747 | 33069 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000405s00021253.1 | PF00010.21 | HLH | 102 | 148 | 9.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.107 |
| SRR1783600 | control | 2.024 |
| SRR1783602 | moderate drought stress | 1.272 |
| SRR1811619 | moderate drought stress | 1.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.344 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.527 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.541 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.097 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.608 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.454 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.050 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.467 |
| SRR2868004 | Drought Stress (root) | 4.929 |
| SRR2967015 | Control (root) | 4.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.382 |
| SRR9715740 | Leaf | 2.732 |
| SRR9715741 | Leaf | 1.598 |
| SRR9715739 | Root | 0.911 |
| SRR9715742 | Root | 1.444 |
| SRR9715743 | Root | 0.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.328 |
| SRR8749028 | MeJA induced 9h | 36.623 |
| SRR8749029 | MeJA induced 9h | 43.649 |
| SRR8749030 | Uninduced | 37.185 |
| SRR8749031 | Uninduced | 23.492 |
| SRR8749032 | Uninduced | 37.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.009 |
| SRR8400027 | Control - Root | 4.165 |