Gene detail

Gene detail information of Glyur000405s00021251.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G46264.1	2.00E-84	heat shock transcription factor B4
NR	XP_003603058.1	1.29E-153	Heat stress transcription factor B-4 [Medicago truncatula]
Swissprot	tr\|Q9C635\|HSFB4_ARATH	3.00E-110	Heat stress transcription factor B-4
trEMBL	tr\|G7J6F2\|G7J6F2_MEDTR	5.00E-154	Heat shock transcription factor {ECO:0000313\|EMBL:AES73309.1}

Sequence

Transcript Sequence

>Glyur000405s00021251.1
CACCCACTCCCCTTGTTTGCACAGACAGACACACTGTCTCTTTCTCTTCTCTGATCTCTCTCACTCTCTCACTCAATGGCTCTTCTCCTAGACAATTGTGGTGAAGGCATTTTACTCTCTTTGGACACTCACAAATCGGTGCCGGCACCNTTCCTTACAAAGACATACCAACTGGTAGACGACCCCATCACCGACCACGTCGTCTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCCGAGTTCGCTAGGGACCTTCTCCCCAACTACTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGGAAGATCGTGCCTGATAGATGGGAGTTTGCAAACGAATTCTTCAGAAAAGGAGAGAAGCACTTTTTATGTGAGATTCATAGAAGAAAGACTTCACACCCTCAACAAGTAGCANCCTTAAATCACCACCAGCTTGGACTCAACAATAACGCCCCAACTGATTTCTTTCCCTTCCAAAACAGACTCAGCATCTCTCCTCCAATAAGTGACTCTGATTGGTGTGACTCACCACCACTCACTAATTCCCATTCCCAACAAGGAGGAAGCATTAATAATGTTATTAGCTACAACAACACTACAGTGACTGCGCTTTCTAAAGACAATGAAAGACTACGGAGAAGCAACAACATGCTAATGTCGGAGCTCACACACATGAAGAAGCTTTACAATGACATAATCTACTTTGTTCAGAACCATGTCAAGCCTGTGCAGCCTCCAACCAACAACACTTACCCTTCTAATTATTTCCTACCACAACAAGTGCAAAGATCACCAATGAAACAAGCACATGTTAATATGAAGCAGTACTCTCCAACCAACAACACATTGAGGAGCTCCATAACAATTGTTGAAGAGCCCACAAATAACAGTAGCANCTTCAAGACTAAGCTTTTTGGGGTGTCTCTTCAATCCAAGAAAAGGGTTCACCCTGAGAACGGTTCTACTAATTACAATTACAACAGTAATCATCTCGTGAATTCGGATCAAACGAACAAGGCTCNTTTGGTTTTGGGAAATGATGATGACTTAGGCTTGAATCTCATGACACCTTCCACTTGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00405	8056	9706	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF
EAR motif-containing Proteins	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000405s00021251.1	PF00447.12	HSF_DNA-bind	26	118	5.20E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.075
SRR1783600	control	6.416
SRR1783602	moderate drought stress	8.362
SRR1811619	moderate drought stress	8.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.545
DRR006520	Root Summer glycyrrhizin high producing strain	1.409
DRR006521	Root Winter glycyrrhizin high producing strain	0.694
DRR006522	Root Winter glycyrrhizin high producing strain	0.682
DRR006523	Root Summer glycyrrhizin low producing strain	4.730
DRR006524	Root Summer glycyrrhizin low producing strain	5.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.666
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.716

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.968
SRR2868004	Drought Stress (root)	0.593
SRR2967015	Control (root)	1.212

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.545
SRR9715740	Leaf	0.558
SRR9715741	Leaf	0.764
SRR9715739	Root	0.620
SRR9715742	Root	0.553
SRR9715743	Root	0.657

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.096
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.429
SRR8400027	Control - Root	6.534