Gene detail

Gene detail information of Glyur000404s00017754

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27540.2	0	MIRO-related GTP-ase 1
NR	XP_003536499.1	0	PREDICTED: mitochondrial Rho GTPase 1-like isoform X1 [Glycine max]
Swissprot	tr\|Q38912\|RAC3_ARATH	2.00E-15	Rac-like GTP-binding protein ARAC3 (Precursor)
trEMBL	tr\|I1L835\|I1L835_SOYBN	0	Mitochondrial Rho GTPase {ECO:0000256\|PIRNR:PIRNR037488}

Sequence

Transcript Sequence

>Glyur000404s00017754.1
AACCTCAGACAGAGCCCACAGAAACTCTTGACAACACCTTTCAGTTTGTTTTCATCTCTGTGCACTTCTCTTCCCTTGTTTGTTTCGGTGCTTCTTTGTCAGTCACAATGCCAGGTAGCNACAGAGCCAGCAACCATAAGGAAATTAGAATCGCAGTGATCGGTGACGGAGGCACCGGGAAATCCACCCTCATACACGCTATGGCTTCAGAGTCATTCCCGCTGAAGGTTCCGCCCGTGCTTCCCACAACTCGGTTGCCACATAATACCTTCTCCGAATCCGTTCCTCTCGTCCTCATTGACACCTCATCAAGCGTGAAAAAACAAGGCAAGCGCAATCAAGAACTGAAGCGTGCGGATGCTGTGGTTGTAACCTATGCATGTGATGATTCAGTAAGCTTTGAGAGGGTGAGCACTTACTGGCTCCCTGAACTGAGAAAGCTGGAGGTGAAGGCACCAGTGATGGTGGCAGGGTGCAAGTTTGATATGCGGGACGAAAACCAGACAGTGAGCCTAGAGAGTCTCACCATGGACATTATGCAGNAGTTTCCCGAAGTTGTCACCTGTATCGAATGTTCTGCGGCTATGCAGTACCAGGTCCCTGAAGTTTTTTNTTTCGCACAAAGAGCAGTACTGCATCCAGTAGGTCCGTTGTTTGATTTTGAAAGAAACGATCTAACAGTTCGGTGTGAAAGGGCGTTANGAAGAATATTTGTTCTTTGTGATCGCGACAAGGATGGTGCCCTCAACGATCAAGAACTTAATAGGTTTCAGGCTAGATGCTTCCATGCACCATTGCAGCCATCTGAAATGGCTCAAATCAAAACAATTGTAGAGCAGGAATTTCCTGAAGGAGTCAACTCTCTTGGTCTTACTTATCCAGGCTTCATTCATGTCCATCATATGTTTCTAGAGAAAGGGAGAACAGAGACAGTATGGGCAGTTCTAAGAGAGTTTGGATACGACAATGATTTAAAACTTCGGGATGATTTCCTTCCATTTTCNTATAAGTGGACTCCTGATCAGAGCGTGGAGCTGACAAGTGAAGCNGTAGAGTTTCTGAATGGTATCTTTAGATTGTTAGATACGGATGAGGATCAATTTCTACAACCTGCAGAAGTTGATGAGCTATTTGTTGCTGCTCCAAAAAGTCCGTGGAATGATGCTCCATATAAGGATGCAGCTGAGAAAACAGACATGGGTTATATCTCTCTGAACGGATTTCTATCTCAGTGGGCCCTTATGACATTACTTGATCCATCATATAGCTTGGCCAATTTGCTTTACATTGGATNTAGTGGTGATCCTTTTTCAGCACTCCGTGTGACTCCTAGTAGATCNGAATATCTCACGAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTCCTAAAAATGCTGGGAAATCTGCTTTGTTGTCTTCATTATTGGGAAGGCGCTTCTCAAATAATTATACTCCGACAACTGTTGAGCAGTATGCGGCAAACGCAGTTGAATTAATAGGGGAAAGTGGAACTGAGAAAATTCTCATATTGCACGAGATACCAGAGGATGGAGTATCGAAATTTTTGAAAAACCAGGATTGTTTGGCTGCATGCGATGTAGCTGCTTTTGTATATGACAGATCAGATGAATANTCATGGAAGAAATCCATAGGTTTACTCGACAAGGTTGTTAACCAAGTAGATCTAACCGGTTATAAAGTTCCCTGCCTCCTCATTGCTGCTAAGGATGACTTNACTCCATTCCCAAGGGAAGTACTAGATTCAATTAAGGTTACTCAGGAATTGGGAATAAAGGCACCTATTCGAGTGAGTATGAAATTAGGTCATTTAAATNATGTGTATAGTAGGATTGCCTATGCTGCAGAGAACCCTCATTTTAACATTCCAAAAACTGAGTTTGTAAGGAAAAGAAGGCAACGCCAGCAGCTTCTTAATCACTCTCTTATTTTTGCCTTAGCTGGGGCTGCTATGGCGGTTGCGGGTTTAAAAGCTCGTCGGGCACGTGCAGCGAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00404	163296	169132	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

GO:0019725 cellular homeostasis

cellular_component

GO:0005622 intracellular

GO:0005741 mitochondrial outer membrane

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005509 calcium ion binding

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000404s00017754.1	PF08477.8	Miro	14	126	3.70E-21
Glyur000404s00017754.1	PF08356.7	EF_assoc_2	228	314	1.10E-27
Glyur000404s00017754.1	PF08355.7	EF_assoc_1	349	418	3.60E-17
Glyur000404s00017754.1	PF08477.8	Miro	426	546	6.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.494
SRR1783600	control	2.379
SRR1783602	moderate drought stress	3.218
SRR1811619	moderate drought stress	3.090

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.139
DRR006520	Root Summer glycyrrhizin high producing strain	3.154
DRR006521	Root Winter glycyrrhizin high producing strain	11.485
DRR006522	Root Winter glycyrrhizin high producing strain	11.322
DRR006523	Root Summer glycyrrhizin low producing strain	8.735
DRR006524	Root Summer glycyrrhizin low producing strain	8.574
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.011
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.141

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.496
SRR2868004	Drought Stress (root)	4.889
SRR2967015	Control (root)	2.989

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.740
SRR9715740	Leaf	1.662
SRR9715741	Leaf	1.001
SRR9715739	Root	1.558
SRR9715742	Root	1.741
SRR9715743	Root	1.752

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.743
SRR8749028	MeJA induced 9h	11.240
SRR8749029	MeJA induced 9h	10.392
SRR8749030	Uninduced	2.500
SRR8749031	Uninduced	3.097
SRR8749032	Uninduced	2.992

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.383
SRR8400027	Control - Root	5.312