Gene detail

Gene detail information of Glyur000404s00017745

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	7.00E-150	Eukaryotic aspartyl protease family protein
NR	XP_003590665.1	0	Xyloglucan-specific endoglucanase inhibitor protein [Medicago truncatula]
Swissprot	tr\|P13917\|7SB1_SOYBN	4.00E-83	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|G7IEE7\|G7IEE7_MEDTR	0	Xyloglucanase-specific endoglucanase inhibitor protein {ECO:0000313\|EMBL:AES60916.1}

Sequence

Transcript Sequence

>Glyur000404s00017745.1
ATGGATAATAATTCCATCTTCCAACATCTCATCACTCTCCTCCTCCTATTCTTTTTCTCCTTCTTTTCACCCACTCTATCTCAACAACAATCTTTCAGGCCCAAAGCCCTGGTTGTCCCCGTTCAAAAAGACAGCTCCACNCTCCAATACGTCGCTCAAATCAACCAAAGAACACCACTGGTCCCATTGAACCTCGTCGTCGATCTCGGAGGCCAGTTCCTCTGGGTCGACTGCGAAACCAAAAACTACATCTCCTCCACATACCGCCCCGCACGGTGTCGCTCCGCCCAGTGCTCCCTCGCCGGAGCATCCACCGGCTGCGGCCTCTGCTTCTCATCACCAAGACCCGGATGCAACAACAACACCTGCNGCGTCTTCCCCGACAACACCGTCACCCACACCGCCACCACCGGCGAGCTCGCCGAAGACGCCGTTTCCGTACAATCCACCAACGGCTTCAACCCTGGACGAAACGTCGCCGTTTCGCGCTTCCTCTTCTCGTGCGCACCCACTTTCTTACTAAAAGGACTCGCCGAAGGTGCCACCGGAATGGCCGGTCTCGGCAGAACGAAAATCGCTCCTCCCTCACAGTTCGCTTCCGCTTTTAGCTTCCACAGGAAGTTCGCCATTTGCTTTTCCTCTTCAGACGGCGTCGTTTTCTTCGGTGACGGCCCTTACGTTTTTCTCCCAAACGTTGACGCTTCAAAGGGTCTCACCTTCACGCCACTCATTGTTAACCCCGTTAGCACCGCTTCCGCTTTCGTTCAGGGTGAACCNTCCTCTGAGTATTTCATTGGCGTGAGATCCGTTAGAATTGACGGAAAGGTGGTTCCCGTTAACGCGAGTCTGTTGTCNATTGACGGAAACGGTTTTGGGGGAACCAAGATTAGTACGGTGGACCCTTACACTGTTCTGGAAGCTTCCATTTACAAGGCCGTTACGGAGGCGTTTATTAAGGCGTCCGCTGNGAGGAACATGACGAGGACGGATTCGTTTGCGCCGTTTGAGGTGTGCTACACGCGTGACAATTTGCCAGGCACGCGCTTGGGTGCGTCGGTGCCTACCATTGAGCTCGTTTTGCAGAAGNAGGATGTGGTTTGGAGGATATTTGGTGCGAACTCGATGGTGAATATAGGCGATGAGGTGTTGTGCCTTGGGTTTATGAATGGTGGGGAGAAGGCAAGGACTTCGATTGTGATTGGAGGGTATCAGCTGGATAACAATCTTCTGCAGTTCGATTTGGCGGCGTCCAGATTGGGCTTCAGCTCCTTGCTCTTTGGAAGACAAACCGAGTGTATACACTTTAACTCCACCTCCACCGCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00404	110028	111353	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000404s00017745.1	PF14543.1	TAXi_N	50	223	1.00E-41
Glyur000404s00017745.1	PF14541.1	TAXi_C	262	423	3.00E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.485
SRR1783600	control	7.320
SRR1783602	moderate drought stress	5.974
SRR1811619	moderate drought stress	5.906

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.210
DRR006520	Root Summer glycyrrhizin high producing strain	50.997
DRR006521	Root Winter glycyrrhizin high producing strain	220.282
DRR006522	Root Winter glycyrrhizin high producing strain	215.116
DRR006523	Root Summer glycyrrhizin low producing strain	67.954
DRR006524	Root Summer glycyrrhizin low producing strain	68.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.979
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.025
SRR2868004	Drought Stress (root)	48.967
SRR2967015	Control (root)	117.318

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.812
SRR9715740	Leaf	28.697
SRR9715741	Leaf	71.688
SRR9715739	Root	341.288
SRR9715742	Root	394.307
SRR9715743	Root	365.599

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	965.291
SRR8749028	MeJA induced 9h	1089.903
SRR8749029	MeJA induced 9h	1582.103
SRR8749030	Uninduced	968.156
SRR8749031	Uninduced	1059.713
SRR8749032	Uninduced	1458.211

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.232
SRR8400027	Control - Root	18.745