Gene detail information of Glyur000404s00017742 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02860.1 | 1.00E-94 | Phenazine biosynthesis PhzC/PhzF protein |
| NR | AFK35115.1 | 1.68E-171 | unknown [Lotus japonicus] |
| COG | YP_004513006.1 | 7.00E-64 | phenazine biosynthesis protein PhzF family [Methylomonas methanica MC09] |
| trEMBL | tr|I3S4C3|I3S4C3_LOTJA | 6.00E-172 | Uncharacterized protein {ECO:0000313|EMBL:AFK35115.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 101897 | 105102 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000404s00017742.2 | PF02567.11 | PhzC-PhzF | 13 | 295 | 6.50E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.483 |
| SRR1783600 | control | 7.449 |
| SRR1783602 | moderate drought stress | 2.149 |
| SRR1811619 | moderate drought stress | 2.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.752 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.755 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.633 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.956 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.600 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.372 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 64.792 |
| SRR2868004 | Drought Stress (root) | 66.454 |
| SRR2967015 | Control (root) | 66.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.087 |
| SRR9715740 | Leaf | 29.357 |
| SRR9715741 | Leaf | 38.433 |
| SRR9715739 | Root | 13.698 |
| SRR9715742 | Root | 13.703 |
| SRR9715743 | Root | 11.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 65.137 |
| SRR8749028 | MeJA induced 9h | 43.020 |
| SRR8749029 | MeJA induced 9h | 50.053 |
| SRR8749030 | Uninduced | 41.640 |
| SRR8749031 | Uninduced | 58.116 |
| SRR8749032 | Uninduced | 39.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.587 |
| SRR8400027 | Control - Root | 20.366 |