Gene detail

Gene detail information of Glyur000404s00017739

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03250.1	1.00E-89
NR	XP_004495221.1	5.45E-148	PREDICTED: uncharacterized protein LOC101510688 isoform X1 [Cicer arietinum]
trEMBL	tr\|I1L826\|I1L826_SOYBN	9.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G03070.1}

Sequence

Transcript Sequence

>Glyur000404s00017739.1
CCACACCGTCATCACTCATCCATCAGGCATATAATCCCAGAAACACAAGAATATTCCCCCGTTTCCTTTATTTAAAAGAAAAAAAAAACTTGTTTATTATCTACAACACAAGGGTTTGCTAGCATTCGTGATTCAACGTTGTACAATATCCCAAATCATTGATCCAGGTTCCTTAGATCTGCTTTCTGCTGCCATCGTTAACTAATCATGGTTCTTCACAGAGAACTCGACCTTCTCCTTTCTCCCACTTTCGCAGACCCTACCAGAGGAGATGGTGCCAAATCCAGTGGAATGTCAATTGAAAAGAAGATAGAGTTCCTTGAGAGCTTGACTGGAAAGGTCACAAATCGAAGATCTCGTAGGTGGTTAAATGATCGTCTCTTGATGGAACTAGTACCGCGTTTAAACGCAGAGGAAATTAGAGGCTTGTTTGCTCCACCACCCTGGGGTGACGAAGTTCCACCTTCAACATTTTCCATGGCCAATGTGGAGGAGTGGGACAGATTCAGGAATATAGACATGGATAAAGAGGTTAATATAATTCACACCCTAGAAAATTCTTTAGAAAAGAGGAAAGGTCACATTGATGCTGACAAGATGGCAGTGTTGAATGGTTGGCGTAGAGTTGGTTGTAGAACAAGAGAGGCACTTCGCCGCAGCTCTCTTTTCGAACTCATAGAGAGTTATGAGGAATGTGTACGGGCCTTCATCACAGAAAGCACTGATGGAGATGTTCTTGAACTACAAATTCGGGATCCTTTCCATAGATTGTTGCTGCATGGTGTCTGTGAGTTCTACAATCTGGCGTCAGATACAGTGACGGATTTTAAAGGCATGGAGTCCTCAAAGATGACAAGGATAAAGAAAAAGAAAAGGGGNTCTCCCGAGCTCCCAAAGATCACTCTTACCCATTTTCTGAGAATGTCCAAGGAAGGAAGTTGGTAGTTTCTTCGGGCACAGCTGTTATCCATCCATTGTCCATACAATAGAACCTTTAACTGTTGTACTGAAAATAGCCCCNGCCTTTGGTACCAGCATTAGTTTTTATTTTATTTTATATCCAGAATAACACTGTAAATTAGTTCGCCGACCTGTATTTTTAATTGGTTGATACCGTCAGTCAACATAAATTGTTGATTGTTGGTTTCCATGTTGTATCAGATTTAAATCAGATTTTAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00404	93754	97366	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000404s00017739.1	PF13902.1	R3H-assoc	29	150	7.20E-32
Glyur000404s00017739.1	PF01424.17	R3H	157	220	9.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.815
SRR1783600	control	31.445
SRR1783602	moderate drought stress	23.845
SRR1811619	moderate drought stress	23.762

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.716
DRR006520	Root Summer glycyrrhizin high producing strain	28.410
DRR006521	Root Winter glycyrrhizin high producing strain	20.366
DRR006522	Root Winter glycyrrhizin high producing strain	19.999
DRR006523	Root Summer glycyrrhizin low producing strain	34.375
DRR006524	Root Summer glycyrrhizin low producing strain	33.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.881
SRR2868004	Drought Stress (root)	61.750
SRR2967015	Control (root)	62.739

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.299
SRR9715740	Leaf	32.274
SRR9715741	Leaf	26.503
SRR9715739	Root	9.443
SRR9715742	Root	10.136
SRR9715743	Root	9.783

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.208
SRR8749028	MeJA induced 9h	27.511
SRR8749029	MeJA induced 9h	43.993
SRR8749030	Uninduced	34.591
SRR8749031	Uninduced	62.554
SRR8749032	Uninduced	47.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.428
SRR8400027	Control - Root	100.646