Gene detail information of Glyur000404s00017727 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G48120.1 | 6.00E-89 | pale cress protein (PAC) |
| NR | XP_003590692.1 | 1.67E-161 | PAC [Medicago truncatula] |
| Swissprot | tr|Q39089|PAC_ARATH | 2.00E-119 | Protein PALE CRESS, chloroplastic (Precursor) |
| trEMBL | tr|G7I2K5|G7I2K5_MEDTR | 6.00E-162 | PALE CRESS protein (PAC) {ECO:0000313|EMBL:AES60943.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 29686 | 34407 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.098 |
| SRR1783600 | control | 7.254 |
| SRR1783602 | moderate drought stress | 7.480 |
| SRR1811619 | moderate drought stress | 7.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.174 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.257 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.855 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.454 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.767 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.776 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.890 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.078 |
| SRR2868004 | Drought Stress (root) | 4.958 |
| SRR2967015 | Control (root) | 4.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.395 |
| SRR9715740 | Leaf | 24.033 |
| SRR9715741 | Leaf | 13.183 |
| SRR9715739 | Root | 1.244 |
| SRR9715742 | Root | 2.716 |
| SRR9715743 | Root | 3.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.611 |
| SRR8749028 | MeJA induced 9h | 4.147 |
| SRR8749029 | MeJA induced 9h | 5.413 |
| SRR8749030 | Uninduced | 3.336 |
| SRR8749031 | Uninduced | 3.205 |
| SRR8749032 | Uninduced | 3.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.547 |
| SRR8400027 | Control - Root | 7.005 |