Gene detail information of Glyur000404s00017726 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03330.1 | 2.00E-41 | Small nuclear ribonucleoprotein family protein |
| NR | XP_003625831.1 | 4.58E-54 | SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula] |
| Swissprot | tr|Q1H595|LSM2_ARATH | 1.00E-52 | Sm-like protein LSM2 {ECO:0000305} |
| trEMBL | tr|F6HQ57|F6HQ57_VITVI | 2.00E-55 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56813.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 27412 | 28784 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000404s00017726.1 | PF01423.17 | LSM | 8 | 103 | 7.20E-13 |
| Glyur000404s00017726.2 | PF01423.17 | LSM | 8 | 73 | 4.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 88.539 |
| SRR1783600 | control | 92.645 |
| SRR1783602 | moderate drought stress | 73.510 |
| SRR1811619 | moderate drought stress | 74.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.590 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.099 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 32.298 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.247 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.172 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 50.588 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.765 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.060 |
| SRR2868004 | Drought Stress (root) | 35.164 |
| SRR2967015 | Control (root) | 31.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.081 |
| SRR9715740 | Leaf | 21.900 |
| SRR9715741 | Leaf | 23.669 |
| SRR9715739 | Root | 11.502 |
| SRR9715742 | Root | 12.633 |
| SRR9715743 | Root | 10.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.369 |
| SRR8749028 | MeJA induced 9h | 19.131 |
| SRR8749029 | MeJA induced 9h | 39.973 |
| SRR8749030 | Uninduced | 26.712 |
| SRR8749031 | Uninduced | 25.280 |
| SRR8749032 | Uninduced | 31.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.543 |
| SRR8400027 | Control - Root | 33.718 |