Gene detail

Gene detail information of Glyur000404s00017722.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24180.2	0	Beta-glucosidase, GBA2 type family protein
NR	XP_007144168.1	0	hypothetical protein PHAVU_007G134300g [Phaseolus vulgaris]
COG	YP_590763.1	3.00E-90	hypothetical protein Acid345_1688 [Candidatus Koribacter versatilis Ellin345]
trEMBL	tr\|V7BEC6\|V7BEC6_PHAVU	0	Non-lysosomal glucosylceramidase {ECO:0000256\|PIRNR:PIRNR028944}

Sequence

Transcript Sequence

>Glyur000404s00017722.1
ATGGTTAGCGGGAATATTTTTCACTGTAGAAAGAATTCGTGGCCTCCTGAAGAGTATATCAGTAGAAACACTTTACAATTGTTTGATTTCGATAGTGCTGGTCCGCCTGAACAAGCTTGGAGAAGGAGATTAAACAGCCATGCCAATCTTCTTAAAGAATTTAGAGTTCGATTGGGGATACGCATGTGGTCATATGTTAGGGAAGAGGCTTCTCATGGAAGGAAAGCACCTATAGATCCTTTCACTCGAGAAAGTTGCAAGCCATCTGCATCTCAAGGAGTTCCACTTGGAGGGATGGGGAGTGGAAGCATTTCAAGAGGATTTAGGGGCGAGTTCAGACAATGGCAAATAATTCCTGGTTTATGTGAAGCATCGCCTGTCATGGCCAACCAATTCTCTATTTTTGTAAGTAGAGATGGAGGAAACAAAAATTTTGCGTCAGTTTTGGCTCCTGGCCAGCATGAAGGTTTAGGATCTAGCAGGAAAGCTGATGATCAGGGTATATCATCATGGGGATGGAATCTAAGTGGCCAGCACTCAACTTACCATGCTTTGTTTCCAAGAGCTTGGACAATTTATGATGGTGAGCCAGACCCAGAACTAAAAATATCGTGCCGGCAGATATCCCCTTTCATACCACATAATTATAGAGAAAGCAGTCTACCTGCTGCTGTTTTTGTCTATACGTTGGTAAACACTGGTAAGGAAAGAGCTAAAGTCAGCCTTCTATTTACTTGGGCGAATTCCATTGGTGGAAACTCACACTTGTCAGGAGATCATGTGAATGAACCATTCATGACAGCGAAAGACAACCCTCCTGTTACTTTTGCCATAGCGGCATGCGAAACACAGAATGTTAGTGTTTCTGTTTTGCCGAGTTTTGGGCTGTCTGAAGGAAGTAGCGTAACAGCGAAAGGAATGTGGCGTAAAATGGTGAAGGATGGGCAATTTGACCGGGAGAATTTCTCTTCTGGACGTAGCATGCCCTCGTCACCTGGGGAGACACTATGTGCTGCTGTTTCAGCTTCCACATGGGTGGAACCCCATGGAAAATGCACTGTTGCATTTAGTGTTGCATGGTCATCTCCAAAAGTAAAGTTTGTGAAAGGAAGCTCTTTCCACAGGAGATATACAAAATTTTATGGGACTTCTGAGAGAGCTGCAGTGGACTTGGCTCATGATGCATTAACACATTACAAACGGTGGGAGGAAGAGATTGAGAAATGGCAGAGTCCTGTTCTCAAGGATGAGACACTACCAGAATGGTACAAGTTTACTTTGTTTAATGAACTCTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGACTCTCCTTTGCTATCTTCAAATATGAGGAATGGCCAGGATCAGGTGAAAGAGTTGGAAAATGCAGTTGGTGTAGTAACTGAAGCTAAAGTGGATTGTAGAAAAAGGGAAGTTATCGACTATACAATAGATAGTACCTATGACTCTACTGCTTCTAGGGGACAGAATCATGTGGATGAAAAACATTATGGAGGTGTATCCCATGAAAATGAATCTGTTAATACTCTCAGAAATGGACACTCCACTGACACACTGCATTCCTCAACAATGAACCTGCAATACAATGATGATGATGTTGGAAGGTTCTTGTACTTGGAAGGTGTGGAATATGTCATGTGGTGCACGTATGATGTGCACTTCTATGCTTCATTTGCACTTCTTATGCTCTTTCCTCGTATTGAATTAAACATACAGCGTGACTTTGCCAAAGCGGTCTTGTGCGAAGATGGAAGAAAAATAAAGTTTCTGGCAGAGGGAAACTGGGGAATTCGTAAGGTTTATGGGGCTGTGCCGCATGATTTGGGGACACATGATCCATGGTATGAAATGAATGCTTACAACATTCATGATACTAGTAAGTGGAAGGACCTGAACCCAAAATTTGTACTTCAGGTTTATCGAGATTTTGCTGCAACAGGTGATTTGCAATTTGGAGTAGATGTGTGGCCTGCTGTCCGTGCTGCAATGGAGTACATGGAGCAATTTGATAGAGATGGTGATGGACTTATTGAGAATGATGGTTTTCCTGATCAAACATATGATACATGGACAGTCCATGGTGTGAGTGCGTACTGTGGTTGTATTTGGCTTGCTGCTCTTCAGGCTGCAGCTGCAATGGCCATTGAACTAGGTGACAGAGAGTTTGCAGAAACATGCAAAAGGAAGTTTATGAAGGCTAAGCCAGTATTTGAAGAAAAGCTGTGGAATGGTTCTTATTTTAACTATGACAGTGGATCAAGTGGTAACAGTAAATCCATTCAGGCCGATCAATTGGCTGGGCAATGGTATACAGCATCCTCAGGGCTGCCCTCTCTTTTTGATGATTTCAAAATCAAAAGTGCTCTCCGTAAGGTTTATGATTTCAATGTCATGAAAATTAAAGGTGGCAGGATGGGTGCTGTAAATGGCATGCATCCCAATGGTAAGGTAGATGAGACCTGTATGCAGTCTCGAGAAATATGGACAGGTGTGACCTATGGTGTTGCTGCGACAATGATACTTGCAGGAATGGAAGAAGAGGCCTTCAAAACTGCCGAGGGTATATTTCTAGCAGGCTGGTCACAAGATGGATACGGATACTGGTTTCAGACTCCAGAGGCATTGACGATTGATGGGCATTACCGGTCCCTCATATATATGAGGCCACTGTCAATTTGGGGCATGCAATATGCATTAACTCTGCCAAAGGCAATTCTTGAGGCCCCTAAAATGAACATCATGGACCGAATCCACCTATCTCCTGTTAATGGAGGATTCTCTTATAATGAAACAGGTGTGAGAAAGATTGCAACGAAAGCAAGATGCTTTAGCAATTCTGTGTTTCATTGTGCTTGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00404	635	10570	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH116

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17108	GBA2	EC:3.2.1.45	Sphingolipid metabolism	map00600
			Other glycan degradation	map00511

Gene Ontology

biological_process
GO:0006665 sphingolipid metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0003824 catalytic activity

GO:0004348 glucosylceramidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000404s00017722.1	PF12215.3	GBA2_N	93	402	1.00E-57
Glyur000404s00017722.1	PF04685.8	DUF608	542	904	9.90E-148

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.030
SRR1783600	control	4.793
SRR1783602	moderate drought stress	5.227
SRR1811619	moderate drought stress	5.240

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.704
DRR006520	Root Summer glycyrrhizin high producing strain	7.800
DRR006521	Root Winter glycyrrhizin high producing strain	18.574
DRR006522	Root Winter glycyrrhizin high producing strain	18.252
DRR006523	Root Summer glycyrrhizin low producing strain	7.563
DRR006524	Root Summer glycyrrhizin low producing strain	7.377
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.337
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.509

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.202
SRR2868004	Drought Stress (root)	32.953
SRR2967015	Control (root)	30.136

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.547
SRR9715740	Leaf	9.082
SRR9715741	Leaf	14.022
SRR9715739	Root	2.589
SRR9715742	Root	11.836
SRR9715743	Root	10.323

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.405
SRR8749028	MeJA induced 9h	17.108
SRR8749029	MeJA induced 9h	8.911
SRR8749030	Uninduced	13.619
SRR8749031	Uninduced	24.116
SRR8749032	Uninduced	14.594

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.580
SRR8400027	Control - Root	14.312