Gene detail

Gene detail information of Glyur000403s00026489

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53690.1	2.00E-73	RING/U-box superfamily protein
NR	XP_004488151.1	8.34E-149	PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum]
Swissprot	tr\|P0CE10\|Y4102_ARATH	6.00E-16	Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBL	tr\|K7MC82\|K7MC82_SOYBN	4.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G20350.2}

Sequence

Transcript Sequence

>Glyur000403s00026489.1
GTATATGAGGGTGAGTGACTGAAAACTTACATCGTAAGCAAAGTTGGCAGTGGCCAGTGGGAGTGTGATGTGTGCCGCACCACTCCTCACTCACTGAGAAAAACCATCAATCAGTATCACCAATCACCAAAATTCCAATAACCCCGAAAACCCTACCACCTCTCTCTTTCAATCACAAAAATTACAAGCTTTGAAATTTGAATTAATCACCNGATGAGTCTTGAGACAAGAAGAAGGGTCGTTCCCCCTTCAACGCCAGAGGTGATCGACGTTGAATCCTTTAACTTCACGCNCAACAGGTCCACCGCTATCAACCTCGATCACTACGACGCCGTTTCGAAACCCCACCCACTTGTCATCGACCTTTCCGATAACGAAGACGACGACGACGTTAGGATCCTCAATTTCATACCCCAAAACACCCCTTTCGGTAAACGACGACGAAACAACAACTACAACAGCAGATTCGAAAAGGGAGAGTCGTCATCATCACCATCAAACGGCACGCCGTTCGTGTGCGAAATCTGCACGGAGACAAAAACGGCGAGGGACGCGTTCACAATAAGCGGTTGTTCCCACGCGTATTGCTCCGATTGCGTGGCGATGTACGTTGCCTCCAAGGTCGAGGAAAACGTGATCAACATCCGGTGTCCGGNTTCCGGTTGCACGGCGGGTTTATTGGAGGCGGAGGATTGTCGTTCGATTCTCCCGGCGGCGGTGTTTGACCGGTGGGGGAAGGCGTCGTGCGAGGCGGCGATCGCAGCATCGGAGAAGTTCTACTGCCCGTTCGGCGACTGCTCGGCGCTGCTGATCGACGACGGGACGGAGGCGGTGAGGGAATCAGAGTGTCCTAACTGTAGGAGGATNTTCTGTGCGCAGTGCAGGGTGCCCTGGCATGATGGGATTGAGTGTGCCGAGTTTCAGAAGCTGAATGCCGATGAGAGGCAGAAGGAAGATGTCATGTTGATGAAGCTTGCTAAGGACATGAAGTGGAAGCGATGCCCCAATTGCAGGTTCTATGTTGCCAAGTCTGAGGGNTGCATGTACATGAAATGCAGGTGTGGACTTGCCTTCTGTTACAACTGTGGAGCTCCTAACTCATCTAACTCCCATTATTGCAGCAATTGTAGACGCTAACAACACTTTGAGTGTGCTATGTTTTATAAAGAAAAATGTTATATGGACACCCATCCTAACTATTCTACACCTTTTTCCCAACCATTACTCATTAAAATTGCCACAATAAAAGGTGTAAAATGGGGTGATTGGATGTCCATATATCGGAACCTTTTTATAAATTAAAACCTATGACCNAGTAATGTTAACTATCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00403	116515	120021	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000403s00026489.1	PF00097.20	zf-C3HC4	102	147	0.00014
Glyur000403s00026489.1	PF01485.16	IBR	178	233	2.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.692
SRR1783600	control	25.900
SRR1783602	moderate drought stress	32.408
SRR1811619	moderate drought stress	32.180

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.486
DRR006520	Root Summer glycyrrhizin high producing strain	33.202
DRR006521	Root Winter glycyrrhizin high producing strain	7.533
DRR006522	Root Winter glycyrrhizin high producing strain	7.253
DRR006523	Root Summer glycyrrhizin low producing strain	19.768
DRR006524	Root Summer glycyrrhizin low producing strain	19.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.721
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.772

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.986
SRR2868004	Drought Stress (root)	20.949
SRR2967015	Control (root)	22.831

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.142
SRR9715740	Leaf	5.824
SRR9715741	Leaf	6.113
SRR9715739	Root	26.290
SRR9715742	Root	26.839
SRR9715743	Root	21.123

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.998
SRR8749028	MeJA induced 9h	4.259
SRR8749029	MeJA induced 9h	3.682
SRR8749030	Uninduced	0.860
SRR8749031	Uninduced	0.287
SRR8749032	Uninduced	0.463

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.569
SRR8400027	Control - Root	12.453