Gene detail information of Glyur000402s00033323 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35030.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004498123.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|O64766|PP185_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g35030, mitochondrial (Precursor) |
| trEMBL | tr|K7LGL7|K7LGL7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G41980.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00402 | 95794 | 98355 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000402s00033323.1 | PF12854.2 | PPR_1 | 59 | 77 | 1.20E-05 |
| Glyur000402s00033323.1 | PF01535.15 | PPR | 84 | 106 | 5.50E-06 |
| Glyur000402s00033323.1 | PF13041.1 | PPR_2 | 143 | 175 | 1.90E-09 |
| Glyur000402s00033323.1 | PF01535.15 | PPR | 176 | 206 | 1.50E-08 |
| Glyur000402s00033323.1 | PF01535.15 | PPR | 207 | 236 | 7.30E-07 |
| Glyur000402s00033323.1 | PF01535.15 | PPR | 238 | 267 | 1.40E-06 |
| Glyur000402s00033323.1 | PF13041.1 | PPR_2 | 298 | 346 | 1.90E-12 |
| Glyur000402s00033323.1 | PF01535.15 | PPR | 374 | 394 | 0.28 |
| Glyur000402s00033323.1 | PF13041.1 | PPR_2 | 402 | 449 | 4.60E-10 |
| Glyur000402s00033323.1 | PF01535.15 | PPR | 477 | 498 | 0.095 |
| Glyur000402s00033323.1 | PF01535.15 | PPR | 542 | 571 | 0.59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.007 |
| SRR1783600 | control | 1.047 |
| SRR1783602 | moderate drought stress | 1.128 |
| SRR1811619 | moderate drought stress | 1.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.554 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.579 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.048 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.502 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.359 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.883 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.546 |
| SRR2868004 | Drought Stress (root) | 1.688 |
| SRR2967015 | Control (root) | 1.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.431 |
| SRR9715740 | Leaf | 0.661 |
| SRR9715741 | Leaf | 0.572 |
| SRR9715739 | Root | 0.308 |
| SRR9715742 | Root | 0.547 |
| SRR9715743 | Root | 0.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.827 |
| SRR8749028 | MeJA induced 9h | 2.131 |
| SRR8749029 | MeJA induced 9h | 2.117 |
| SRR8749030 | Uninduced | 0.660 |
| SRR8749031 | Uninduced | 0.830 |
| SRR8749032 | Uninduced | 0.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.130 |
| SRR8400027 | Control - Root | 1.973 |