Gene detail

Gene detail information of Glyur000401s00023649

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03800.1	4.00E-133	D-aminoacyl-tRNA deacylases
NR	XP_007156371.1	0	hypothetical protein PHAVU_003G280600g [Phaseolus vulgaris]
COG	YP_007688444.1	2.00E-29	archaeal conserved hypothetical protein [Thermoplasmatales archaeon BRNA1]
Swissprot	tr\|Q9ZPQ3\|GEK1_ARATH	1.00E-170	D-aminoacyl-tRNA deacylase
trEMBL	tr\|V7CGG1\|V7CGG1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28365.1}

Sequence

Transcript Sequence

>Glyur000401s00023649.1
ATGCAAATGCAATTGCAATTGCACCAACCGTGATCAAAGGCAATNCTTCTTCTTGTACAGGAACACTAACAGGACATGTTACTTGGTATCATTCGTTCCTGTCCAGTCAGGCCCCAACCGACAACTACACGAGCCGCCAATCACCCCTTTCTCCTTCCTCCATTTCCAGTGTTCCACCTAATAAACCGTTGGCTCAGATCTTCAATACCAGCTCCCATCTTTTCCTCCCATATAATAAACACTGCATCTACAATTACACCCTCATCATCCCCAACACCTTCAACCCATCACCATCATCAAAGGGACATCAAACAGAACCCACTCGCNCAAGAGACAGAAACTCGCTCCAACAAAGCAATGGTGGCGCTTCTGGTGGCAACCACCTCCGACCCGGCTTCTATCAACCCCGCCAATGCCCTCTTGGCCATNCCAGGCTGGCAACCCGGACCCCATTTCCAGGATNACATGAAGAGCTATGTGAATGAAGGGTTGAGGGTGTTGCTACATGGGAAGGGCATAGTGGAGGAGGATGACTTGGACAAAAGGTGGGAAGAGGTGACTGGAGAGGTTATTGATGAGGTCATCTTCTTCAGCAAGCANACAGCTGTTTCTAACAAACCTGCCCTCACTGTTCACCCTATTGGAGTTCCTCATTTGCGTGAAGGCGATGTTCCACCTCAAGGTGGGAAACCTGGATGGGCAGCNCTGCCAAATCCCAGGATCGGGCCTTGGCTAAGACTCCTGAAAAACATGGCTCAGGCTCATAATCTGGTCCCTGAATTTGAGATTACTTTGGAGGCCACTCATCATGGACCATTGACAAATAAGCCAACCATGTTTCTGGAGATTGGTAGCACCGAAGACTATTGGAAGAGACAAGATGCTGCTCAAGTTATGGCTCAGTTGGTTTGGGAAGGACTTGGACTTGGAGGAGGGACTGATGTNGGAAACTGGAGCAGAGAGAANGATAAGAAGAAAGTACTTCTTGGGATAGGTGGTGGACACTATGNNCCTCGGCATNTGGANGTAGTATTGAAAGATGATGTTTGGGTTGGTCACCTACTTTCTGGATATTCATTGCCAATGGAAGATCCAAACCAGTCAAAAGGAGAAACAAATGTGGAGATTGGAGGAACTTGGAGAGAGTCTATAAAAGCTGCATATGAGGCCACTAGATCTGCTTTTCCTGGNGGCGAAATTCTTGCACATCTTGACCAAAAGAGTTTCAAGGGCTGGCAGAAGAATGCCATCACAGGATTCCTTGCGGAGCAGAATATTAAAATTGGAAAACCAAATAACTTCTATTGAGTGTGAACATATTGAATGGGCAGAGTGCAGACAGAGGCAGGCTGAAAATTTTTGTAGGCCAGACTAGCAATTCAATTCAGTTCACCTAAGATCATTGTNATAGTTAATAAGTGAAAGTTTGAGATAAATTGATATATTGATGTATACATAAATTCTAATTCTGGTAAAAAACTACACATATATGTAATAGACACTGTAGAAGCTTGGCATTTATGTTACGTTCCCATGTGTTTATTTGGAGATTTGTAGCCTAGAGGCCCTAGACTGATGATAAGTGTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00401	46574	53084	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0016788 hydrolase activity, acting on ester bonds

GO:0051499 D-aminoacyl-tRNA deacylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000401s00023649.1	PF04414.7	tRNA_deacylase	150	405	3.10E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.242
SRR1783600	control	29.324
SRR1783602	moderate drought stress	31.425
SRR1811619	moderate drought stress	31.461

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.482
DRR006520	Root Summer glycyrrhizin high producing strain	36.875
DRR006521	Root Winter glycyrrhizin high producing strain	792.514
DRR006522	Root Winter glycyrrhizin high producing strain	759.682
DRR006523	Root Summer glycyrrhizin low producing strain	41.568
DRR006524	Root Summer glycyrrhizin low producing strain	41.134
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.927
SRR2868004	Drought Stress (root)	41.472
SRR2967015	Control (root)	54.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.336
SRR9715740	Leaf	23.349
SRR9715741	Leaf	27.140
SRR9715739	Root	12.138
SRR9715742	Root	40.154
SRR9715743	Root	32.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	72.604
SRR8749028	MeJA induced 9h	126.717
SRR8749029	MeJA induced 9h	211.863
SRR8749030	Uninduced	180.659
SRR8749031	Uninduced	135.540
SRR8749032	Uninduced	237.660

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.358
SRR8400027	Control - Root	57.979