Gene detail

Gene detail information of Glyur000401s00023648

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03780.1	2.00E-107	Translin family protein
NR	AET03210.2	0	translin-associated factor X [Medicago truncatula]
COG	YP_004891764.1	4.00E-10	RNA-binding protein of the translin family [Thermoproteus tenax Kra 1]
trEMBL	tr\|G7LG96\|G7LG96_MEDTR	0	Translin-associated factor X {ECO:0000313\|EMBL:AET03210.2}

Sequence

Transcript Sequence

>Glyur000401s00023648.1
CAAAAAAAAAAAACTAAAACCCCAGGAAATAGCTGCAGCGCTTAGGTGTCCTTCTAGTGACAGAACAGATGTTGCATTCCTTTTCCTCTTCACTTCAGAGACTTTCTCTATTCATGGCATCNACAAAACCTCAACGTCTCCACCAAATTTCAGTGACAAACTCCCAGAGCTCAGCAAAGAGGGCAAGAAGTACCATGGGCACTGCNACTACCACCGAGTCTGCAATGAAGGACGCTTTTACCAAATATGCTGAATATCTCAATGACCTTAATGAAAAACGGGAAAGAGTGGTCAAAGCAAGTCGTGATATNACAATGAATAGCAAAAAGGTCATATTTCAAGTGCACAGGATGAGTAAATACAATAAAGTGGAAGTACTTGGGAAAGCAGAAAAGGATTTAGCAGCTGTGACAGATCAATNCATGTCTCGACTAGTCCGAGAATTGCAGGGAACAGATTTTTGGAAGCTAAGACGAGCATANTCACCTGGGATACAGGAGTATGTTGAAGCGGCTACATTCTGCAGTTTCTGTAAAAACGGAACTCTTTTGAAGCTTGATGAGATAAATAACACATTGTTACCGCTTAGTGATCCTTCTCTTCAGCCTCTGCAGATAAATATCCTTGACTATCTATTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGTTTGGCAATTGGTAGGATATCGGATGGTGAACTTGAATTTGCTGAGAAGATATGCAGATTTGTACGTGAAATATACAGGGAGCTTACACTTGTAGTGCCACATATGGATGATGGTTCTGATATGAAAACAAAGATGGATACAATGCTCCAAAGTGTCATGAAAATAGAGAATGCTTGCTTTAGTGTCCATGTGAGAGGATCAGAGTATATTCCACTTCTCGGATCAAATGACCCAAGTTCTTTCTTAGTGGGNGTTCCGGATATTGAACTATGAGGTTATATCCATTAGACACTTTGTGAAATGGATGTAGATGAGTGAATAGTCTACTGGTAGATATTGACACTGTGTGATCATCAATGATGAAATTTACAACTGATTCTTAGCAAAGATGACATGTGTATGGTTGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00401	38093	41863	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000401s00023648.1	PF01997.11	Translin	69	268	9.30E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.118
SRR1783600	control	5.667
SRR1783602	moderate drought stress	6.989
SRR1811619	moderate drought stress	6.607

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.389
DRR006520	Root Summer glycyrrhizin high producing strain	12.159
DRR006521	Root Winter glycyrrhizin high producing strain	11.951
DRR006522	Root Winter glycyrrhizin high producing strain	10.209
DRR006523	Root Summer glycyrrhizin low producing strain	10.009
DRR006524	Root Summer glycyrrhizin low producing strain	11.476
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.378
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.597

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.851
SRR2868004	Drought Stress (root)	35.447
SRR2967015	Control (root)	37.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.634
SRR9715740	Leaf	11.086
SRR9715741	Leaf	10.817
SRR9715739	Root	3.809
SRR9715742	Root	12.812
SRR9715743	Root	7.875

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.488
SRR8749028	MeJA induced 9h	10.596
SRR8749029	MeJA induced 9h	9.323
SRR8749030	Uninduced	2.863
SRR8749031	Uninduced	1.837
SRR8749032	Uninduced	2.692

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.629
SRR8400027	Control - Root	26.642