Gene detail

Gene detail information of Glyur000400s00020173

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22220.1	4.00E-67	SufE/NifU family protein
NR	XP_004501923.1	1.70E-106	PREDICTED: iron-sulfur cluster assembly protein 1-like [Cicer arietinum]
COG	YP_005436383.1	2.00E-66	Fe-S cluster assembly scaffold protein IscU [Rubrivivax gelatinosus IL144]
Swissprot	tr\|O49627\|ISU1_ARATH	1.00E-84	Iron-sulfur cluster assembly protein 1 (Precursor)
trEMBL	tr\|I1KCF6\|I1KCF6_SOYBN	1.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G19310.1}

Sequence

Transcript Sequence

>Glyur000400s00020173.1
CGAAAAAAAATAACAGATACAACGAGGATATTTTAAGCATTATGTGTGATTAGAAAAGACAGTGTCTTTGGAAAAGTCCAAACCAGATTCTTACGCAACACCGCCTTAAAAGGGAAGCCTTAATCCTATTTCATTCTCTTCCTCCTCTTGTTGTATTCTACTCCTCTCCTCTCTCAAAAACATTGATCGACCACGAAAAAAAGGAGAGAAAAACAAAAGGAAAGGAAAGGAAAAATGCTGAGAATCGCAGCGTGCGCGAGGAGACTGGTGGGAACGGCGTCGTTGGAGGTGCCACTTCCGAGCGTTAGGGTTCTCCCGCGGCTCTACCACGAGAGGGTGGTGGACCACTACAACAATCCCCGTAATGTTGGATCCTTCGACAAGAACGACGCCAACGTTGGCACCGGTCTGGTCGGTGCACCCGCCTGTGGCGATGTCATGAAGCTCCAGATTAAGGTTGATGAGAACACCGGAAAAATCGTCGACGCTCGCTTCAAAACCTTCGGCTGTGGATCCGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAAGCAAATGGAGGAGGTTTTATCCATTAAGAACACTGAGATTGCAAAGCATCTTTCACTCCCACCAGTTAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCAGCTGTTAAAGATTATGAAGCTAAGCGAGGCTCGGCAACTATAAGCGGAGAGGCAACAACTGGAGACAAAGCTACCACTGCTTGATTTCTTCCATTTGTAGAATGATGATGAAAAAAACCGTTAGTATGGTTCTCTAATGGTGCTAACGAGTCTATTGCACAAACATCAGAACATCTTGAGGCCTGACTTCTCTTGGATGGAGCCAGTCAGCTAGATTGTATTCTCATAATGTGAAGTAAATACTTGTAATACTACCTATGGTTTGTTATATTTGCATGGTTTGTAGGAATCAAATAATGTTTTTATAATATGTACACAATACAATAAAGCAGATATTTACATGTGATATTTTGGAAGGCCATGGCTTTATTTATCCTTGCTGAAGCGCACAGCATCATATTTACNCAATTTTGTTTTGGAACCATATGTTTGTGATAGAACCTGGTATTTTATNAGAAATATACAGGGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00400	130884	132977	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016226 iron-sulfur cluster assembly

molecular_function

GO:0005506 iron ion binding

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000400s00020173.1	PF01592.11	NifU_N	31	155	3.10E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	458.206
SRR1783600	control	460.972
SRR1783602	moderate drought stress	957.256
SRR1811619	moderate drought stress	951.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	731.456
DRR006520	Root Summer glycyrrhizin high producing strain	721.123
DRR006521	Root Winter glycyrrhizin high producing strain	2080.257
DRR006522	Root Winter glycyrrhizin high producing strain	2020.437
DRR006523	Root Summer glycyrrhizin low producing strain	534.294
DRR006524	Root Summer glycyrrhizin low producing strain	532.277
DRR006525	Leaf Summer glycyrrhizin high producing strain	272.077
DRR006526	Leaf Summer glycyrrhizin high producing strain	271.266

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	246.110
SRR2868004	Drought Stress (root)	287.606
SRR2967015	Control (root)	310.732

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	222.316
SRR9715740	Leaf	395.145
SRR9715741	Leaf	317.137
SRR9715739	Root	377.861
SRR9715742	Root	513.006
SRR9715743	Root	443.843

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	220.558
SRR8749028	MeJA induced 9h	195.132
SRR8749029	MeJA induced 9h	210.013
SRR8749030	Uninduced	216.711
SRR8749031	Uninduced	129.838
SRR8749032	Uninduced	235.678

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	294.068
SRR8400027	Control - Root	295.831