Gene detail

Gene detail information of Glyur000400s00020171.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32180.1	0	pantothenate kinase 2
NR	XP_004501924.1	0	PREDICTED: pantothenate kinase 2-like isoform X1 [Cicer arietinum]
COG	YP_005445654.1	4.00E-44	hypothetical protein PSMK_15980 [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|Q8L5Y9\|PANK2_ARATH	0	Pantothenate kinase 2
trEMBL	tr\|V7AWN9\|V7AWN9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10067.1}

Sequence

Transcript Sequence

>Glyur000400s00020171.1
GAAGAAAGAAAGAACAGTAGGGAATCCAAATCCGAGTGTTTACTCGTTAATCTCAAAGAGCAGCAACAGATTGAGCGCACGCGCTCTATTGGCGCGTATGAGTGNACGCGTATGTGCACGTGCGCTGCCCCCAACAACAGTGATCACATCACAATAAGATCATAGGAGCACCGTTTGCCTCTCCACTCTCCGCACCCTTCTCTTCTCTCACATCCTTCCAAGAATAAAATGGCTGGCTCGGTAGAAGAAGAGGATCANCGAGTTATTGGAATTGACGAAGAGGGACAGAAGAACAAAGGGACTGAGGGGAACAACAAACGCACACAATTGGAGTTTGGTAGTGGTGTTGGTGGTCAAGGGGAAAAAGACATGGCTCCTGCTACGGGGAGTTCTATTCACAGGTCGAGTTCAAGGCCTCAACTTGATGTAAGCAAAGCTGAGATTCAAGCAAATGTGGAGGAGAAGTATCCCACCATTTTGTTGCCCAATCAATCTGATGATTTGTCTCACCTGGCTCTCGACATTGGAGGGTCTCTGATAAAGTTGGTGTACTTTTCAAGACACGAAGACCAATCAGCCAATGATAAAAGGAAGAGAAGTGTGAAGGAGCGACTGGGGCTTTCAAATGGTAACAGGAGAAGCTATCCTATTCTTGGTGGAAGGCTTCACTTTGTGAAGTTTGAAACAAGAAAGATTAATGAGTGCTTAGATTTCATCCATTCAAAGCAGCTTCACTGTGGTGCATACAAGTATGCTGATCTTTTCAAAGAAAGACTTGGGGTTAGTCTTGACAAAGAAGATGAAATGGATTGTCTTGTGGCAGGAGCAAATTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTCACACACATGGAGGGCCAGAAAGAGTTTGTTCAAATTGACCCNAATGATTTGTTCCCTTATCTTCTAGTTAATATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGGAAATTTGAGAGGGTTAGTGGGACAAATGTTGGTGGTGGTACTTATTGGGGCCTGGGGAGANTGTTAACAAAGTGCAAGAGCTTTGATGAGTTGCTTGAGCTGAGCCAGAAAGGAGATAATAGAACTATTGANATGCTTGTTGGGGACATTTATGGTGGTTTAGACTATTCTAAGATTGGCCTATCAGCTTCCACTATTGCTTCAAGTTTTGGAAAAACTATATCAGAAAAAAAGGAGCTTGACGACTACAGGCCTGAAGACATATCACTCTCTCTTCTACGGATGATTTCATACAATATTGGCCAGATAGCTTACTTGAATGCATTACGATTTCGGTCTAATGGGGGAGCACAAGCAATGTTCTTGCGACATGAAGGCTTTCTAGGAGCTTTAGGTGCATTTATGAGCTATGAAAAGCATGGTTTAGATGACCTCATGGTGCATCAGTTAGTTGAAAGGTTTCCGATGGGTGCTCCATATACTGGAGGCAAGATTCATGGCCCACCACTTGGAGATTTGAATGAGAAGGCAAGTATTTCGTGGATGGAGAAGTTTTTGCAAAAGGGAACTGAGATTACTGCACCTGTGCCTATGACTCCACTTGCTGGAACTACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAGTACTCTGCGATCTGATGCGAGTGCTCTAAATGTTGGCGTTCTCCATCTAGTACCAACTTTGGAGGTGTTTCCATTGTTGGCAGACCCAAAATTGTATGAACCCAATACAATTGATCTTGCAGATCACAGTGAATTAGAATATTGGTTAACTATTTTGTCAGAGCACTTGCCAGATCTTGTGGACAAGGCTGTTGCAAGTGAAGGTGGAACTGGTGATGCCAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACTTGTCAAGGTTGATGGAGGAGCCTTCTGCATACGGGAAGTTAGGCCTGGCCAATCTATTGGAAATGAGGGAAGAGTGCTTGAGGGAATTCAATTTCGTTGATGCCTATAGAAGTATAAAGCAGAGGGAAAATGAGGCNTCACTTGCTGTTTTACCTGACTTGTTGGTAGAACTTGATGGCATGGATGAGGATACAAGGTTGCTTACTCTAATTGAAGGGGTTCTGGCTGCAAACATTTTTGACTGGGGATCTCGTGCATGTGTGGATCTCTATCATAAAGGAACAATTATTGAAATTTACAGAATGAGTCGCAATAAAATGCAGAGACCTTGGCGGGTGGATGATTTTGATGTCTTCAAAGAGAGAATGTTAGGGACCAGGGACAAGAAGATGCCCCCTCATAGAAGGGCTTTACTTTTTGTTGATAATTCAGGTGCTGACATTGTTCTAGGGATGCTTCCACTGGCAAGGGAGCTCCTCCGTCGTGGAACTGAAGTAGTTCTGGTTGCAAACTCGCTTCCGGCTTTAAATGATGTGACTGCAATGGAGCTTCCTGATATTGTAGCTGAGGCTGCCAAGCATTGTGACATTCTAAGGCGAGCTGCTGAAGCTGGAGGCTTGCTTGTGGATGCAATGATTAATTCTTCAGACAGCTCTAAAGAAAAATCATCTTCNGTCCCCTTGATGGTTGTTGAGAATGGGTGTGGTAGTCCATGTATAGACTTNAGACAGGTCAGCTCTGAGCTGGCCGCTGCCGCAAAAGATGCCNATTTGATAATTTTGGAAGGGATGGGTAGAGCTCTTCATACTAACCTCTATGCTCGGTTTAAGTGTGATGCTTTGAAGCTTGCGATGGTGAAAAACCAGAGATTGGCTGAAAAGTTGGTTAAAGGGAACATATACGACTTTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00400	116052	128823	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09680	coaW	EC:2.7.1.33	Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process
GO:0015937 coenzyme A biosynthetic process

molecular_function

GO:0004594 pantothenate kinase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000400s00020171.1	PF03630.9	Fumble	93	361	8.40E-101
Glyur000400s00020171.1	PF01937.14	DUF89	574	851	2.10E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.023
SRR1783600	control	4.074
SRR1783602	moderate drought stress	5.682
SRR1811619	moderate drought stress	5.738

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.974
DRR006520	Root Summer glycyrrhizin high producing strain	8.651
DRR006521	Root Winter glycyrrhizin high producing strain	6.776
DRR006522	Root Winter glycyrrhizin high producing strain	6.788
DRR006523	Root Summer glycyrrhizin low producing strain	10.761
DRR006524	Root Summer glycyrrhizin low producing strain	11.176
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.004
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.824

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.724
SRR2868004	Drought Stress (root)	21.728
SRR2967015	Control (root)	23.922

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.636
SRR9715740	Leaf	14.455
SRR9715741	Leaf	16.679
SRR9715739	Root	4.981
SRR9715742	Root	16.053
SRR9715743	Root	13.948

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.307
SRR8749028	MeJA induced 9h	4.670
SRR8749029	MeJA induced 9h	1.578
SRR8749030	Uninduced	1.596
SRR8749031	Uninduced	0.605
SRR8749032	Uninduced	0.920

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.713
SRR8400027	Control - Root	15.732