Gene detail information of Glyur000400s00020167 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATCG01240.1 | 4.00E-60 | ribosomal protein S7 |
| NR | YP_009027316.1 | 6.96E-90 | ribosomal protein S7 (chloroplast) [Glycyrrhiza glabra] |
| COG | YP_007125219.1 | 4.00E-50 | 30S ribosomal protein S7 [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q6EM99|RR7_EUOAL | 2.00E-88 | 30S ribosomal protein S7, chloroplastic |
| trEMBL | tr|A0A023I715|A0A023I715_GLYGL | 3.00E-90 | 30S ribosomal protein S7, chloroplastic {ECO:0000256|HAMAP-Rule:MF_00480} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00400 | 96871 | 97266 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000400s00020167.1 | PF00177.16 | Ribosomal_S7 | 1 | 125 | 4.10E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 116.070 |
| SRR1783600 | control | 121.107 |
| SRR1783602 | moderate drought stress | 102.386 |
| SRR1811619 | moderate drought stress | 102.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 126.896 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 126.847 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 171.350 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 166.609 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 144.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 139.159 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 236.009 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 228.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.050 |
| SRR2868004 | Drought Stress (root) | 4.570 |
| SRR2967015 | Control (root) | 3.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.746 |
| SRR9715740 | Leaf | 8.237 |
| SRR9715741 | Leaf | 15.319 |
| SRR9715739 | Root | 65.449 |
| SRR9715742 | Root | 15.018 |
| SRR9715743 | Root | 28.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.529 |
| SRR8749028 | MeJA induced 9h | 4.924 |
| SRR8749029 | MeJA induced 9h | 11.224 |
| SRR8749030 | Uninduced | 12.268 |
| SRR8749031 | Uninduced | 5.316 |
| SRR8749032 | Uninduced | 4.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.646 |
| SRR8400027 | Control - Root | 2.187 |