Gene detail information of Glyur000400s00020166 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATCG01230.1 | 4.00E-35 | ribosomal protein S12B |
| NR | YP_009027253.1 | 1.38E-45 | ribosomal protein S12 (chloroplast) [Glycyrrhiza glabra] |
| COG | YP_007160600.1 | 3.00E-41 | 30S ribosomal protein S12 [Cyanobacterium aponinum PCC 10605] |
| Swissprot | tr|A4GGC9|RR12_PHAVU | 6.00E-45 | 30S ribosomal protein S12, chloroplastic |
| trEMBL | tr|A0A023I711|A0A023I711_GLYGL | 5.00E-46 | 30S ribosomal protein S12, chloroplastic {ECO:0000256|HAMAP-Rule:MF_00403} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00400 | 96381 | 96749 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000400s00020166.1 | PF00164.20 | Ribosom_S12_S23 | 34 | 104 | 5.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 210.139 |
| SRR1783600 | control | 216.954 |
| SRR1783602 | moderate drought stress | 172.863 |
| SRR1811619 | moderate drought stress | 174.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 165.285 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 166.619 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 200.947 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 206.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 190.252 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 194.200 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 350.906 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 353.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.007 |
| SRR2868004 | Drought Stress (root) | 5.768 |
| SRR2967015 | Control (root) | 4.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.968 |
| SRR9715740 | Leaf | 4.542 |
| SRR9715741 | Leaf | 11.354 |
| SRR9715739 | Root | 50.987 |
| SRR9715742 | Root | 10.154 |
| SRR9715743 | Root | 19.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.585 |
| SRR8749028 | MeJA induced 9h | 5.413 |
| SRR8749029 | MeJA induced 9h | 8.503 |
| SRR8749030 | Uninduced | 12.974 |
| SRR8749031 | Uninduced | 5.254 |
| SRR8749032 | Uninduced | 10.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.781 |
| SRR8400027 | Control - Root | 1.176 |