Gene detail

Gene detail information of Glyur000400s00020162

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62520.1	2.00E-50	similar to RCD one 5
NR	XP_004501930.1	2.43E-159	PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2-like [Cicer arietinum]
Swissprot	tr\|Q9FJJ3\|SRO5_ARATH	9.00E-64	Probable inactive poly [ADP-ribose] polymerase SRO5
trEMBL	tr\|G7J5G4\|G7J5G4_MEDTR	2.00E-143	Inactive poly [ADP-ribose] polymerase SRO4 {ECO:0000313\|EMBL:AES71520.1}

Sequence

Transcript Sequence

>Glyur000400s00020162.1
CAGGCCCTCTCTCTCTTTCTCTTTCTCTTTCTCCAAAACAAGCAGCGCCAGCCTCTCCAACTCTATGCACCGCCCATCGCAAACTTCACAATCCCATTTTCAATTCAAATTCTCAAAACATATCGTAATATCTGGCNGTTGGTTCCGTTCCCAGTTTTATGAACCCCGGCCTCCTCTATTTTTAACACCATTCCTCTTCTTATCACTCACTCACAAGACACAACTAACTATTAACTAACCTCCCCACGTCCCAAATCTTCTTTACATCATCCATCCTCTGCTTTCACCCTCTCTTTTCTTCCGCGCCAAGTTTCCCATCCATCACTATAAAGTATCAACACACGCACACCACTAACTAACTAACTAATCCTTTTCTACTTGTCTTCATCAGCTTCCGAATTATTCGAACCATTTTATTTTACACTATGGAACAACCAACATTCTCTCAAACAGGGTTCGGTACTGCTTCACCTTCACCTCTTAGTTCCCAACAAGAAGAGGTGTGGCAGCATCATCATCATGATTTCAGCAACGAAGATGATTCCGTCGTTTCCGATTGCGAGAGCGGTGTCTCCGGCACCAGACTGGTGCAACAACAACATAGTCCAAGTCCTGGGTTGTTTCTAGTTAGGCTCGGAGAAGGAGACGTTGTTCACGACCTCCTTAAGAGGAGGTTCCTACGTGGCCTGGGCTTTCTCGGGGCCCAAGCCCAGGTTCTCTCCATTCACCGAAACGCTTGCTCCGGCGTCGTTTCGCAAGCGAGGCTTCAGTCCTTCCACGTTTACGCAAGGGCGGTTGCTAACCTGCGCGGTGGTNGTAACGCCAACGTTAAGTACGCTTGGTACGGAACCCGTGGTGAGAAAGAGATCAGAGACATTCTCTCACACGGTTTCGGTCACGCCCACGGTAACACGCTGTGTCTCTCCCCAGATGATTCTCCTCTCGAAAGTGTGAGAAGCTGTGTTGTTGGGGAAGATGGTGTGAGGCACTTGTTACTGTGCCGAGTGATTTTGGGGAGAACAGAGGTTGTGGAAGCTGGCACAGAGCAATGTTACCCGAGTTGTGAGGACTATGATTCAGGGGTGGATAGTTCTTCAGCTCCTAACAAGTACTTCATTTGGAGTAGCAGCATGAACACTCATGTCTGGCCTGCATATGTTATCAGCTTCAGAGTCCCTTCCTTGATGAAAGGGAATGAGAGGAGTGAAGAAGAAGAAGAAGTACCTTTGAGACCAACTTCGCCTTGGATGCCATTTCCGACTTTGATTTCAGTGCTTTCCAAGGTTTTGCCTCCACCTGATATTGCCCTCATCTCCAAGCTCTACAAGGCTAAAAAAGAAATGAAGATTTCACGACATGAATTGATACAAAAACTGAGACAAATAGCAGGAGACAAGTTGCTAATGGCAGCCATTAAGTCTTACAGAGCAAAGGTACAAACAACTAATCTCTTTTCTGATGATTTTGATCTCTATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00400	31907	33711	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000400s00020162.1	PF12174.3	RST	269	336	2.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.024
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.239
DRR006520	Root Summer glycyrrhizin high producing strain	1.254
DRR006521	Root Winter glycyrrhizin high producing strain	240.890
DRR006522	Root Winter glycyrrhizin high producing strain	234.447
DRR006523	Root Summer glycyrrhizin low producing strain	1.921
DRR006524	Root Summer glycyrrhizin low producing strain	1.891
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.387
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.328

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.043
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.035

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.496
SRR9715740	Leaf	0.398
SRR9715741	Leaf	0.177
SRR9715739	Root	0.134
SRR9715742	Root	0.018
SRR9715743	Root	0.041

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.828
SRR8749028	MeJA induced 9h	446.695
SRR8749029	MeJA induced 9h	264.185
SRR8749030	Uninduced	56.481
SRR8749031	Uninduced	53.651
SRR8749032	Uninduced	83.363

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.521
SRR8400027	Control - Root	1.296