Gene detail information of Glyur000399s00017833 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65730.1 | 0 | YELLOW STRIPE like 7 |
| NR | XP_004515282.1 | 0 | PREDICTED: probable metal-nicotianamine transporter YSL5-like [Cicer arietinum] |
| COG | YP_004271220.1 | 3.00E-35 | oligopeptide transporter [Planctomyces brasiliensis DSM 5305] |
| Swissprot | tr|Q9SHY2|YSL7_ARATH | 0 | Probable metal-nicotianamine transporter YSL7 |
| trEMBL | tr|I1MQH0|I1MQH0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G33840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00399 | 146874 | 157782 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000399s00017833.1 | PF03169.10 | OPT | 56 | 654 | 2.70E-134 |
| Glyur000399s00017833.1 | PF03169.10 | OPT | 679 | 895 | 3.40E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.593 |
| SRR1783600 | control | 1.522 |
| SRR1783602 | moderate drought stress | 2.140 |
| SRR1811619 | moderate drought stress | 2.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.985 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.566 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.598 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.667 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.546 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.899 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.160 |
| SRR2868004 | Drought Stress (root) | 8.196 |
| SRR2967015 | Control (root) | 12.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.909 |
| SRR9715740 | Leaf | 10.782 |
| SRR9715741 | Leaf | 14.260 |
| SRR9715739 | Root | 3.445 |
| SRR9715742 | Root | 2.212 |
| SRR9715743 | Root | 2.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.248 |
| SRR8749028 | MeJA induced 9h | 0.128 |
| SRR8749029 | MeJA induced 9h | 0.451 |
| SRR8749030 | Uninduced | 0.082 |
| SRR8749031 | Uninduced | 0.018 |
| SRR8749032 | Uninduced | 0.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.449 |
| SRR8400027 | Control - Root | 3.343 |