Gene detail

Gene detail information of Glyur000399s00017828

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68290.1	3.00E-85	endonuclease 2
NR	XP_003614608.1	2.36E-159	Nuclease S1 [Medicago truncatula]
Swissprot	tr\|Q9C9G4\|ENDO2_ARATH	3.00E-105	Endonuclease 2 (Precursor)
trEMBL	tr\|G7K0J7\|G7K0J7_MEDTR	9.00E-160	S1/P1 nuclease family protein {ECO:0000313\|EMBL:AES97566.1}

Sequence

Transcript Sequence

>Glyur000399s00017828.1
CAAAGTATCAATCACTCATAACTCTCCTGCACTTCCCAAAAATGAAATAAAAGTAAGATTTATATATTCATATATACATTTCACAACCAGCAGAGTGCTATGATGGGTTGTTGTTACAGGATTCAGCTAGTGGCCATAGTCACAGTCTTATTCCTGCTATTGCTTCCAAATAGCACACAAGGGTGGGGAGAAGATGGGCATGCCATTGTTTGTAAGATTGCTCAGTGTTCATGGGCAGATCATGTCAGGTTTATCTATCCTTGGTCATCTGCTTTGCACTTTGCTGATACTCCTGACTCTGTTTGCAGTTACCAGAACAAAAGGGATTGTGTAGACCACAAAACTGGACTTGAGGGGCGATGTGTTGTAGGGGCAATCACCAATTACACTGACCAGCTCCTAAGTTATGGCAGTGATACTGAATCTAAATATAACCTCACACAATCCCTTCTATTCCTTTCTCACTTTATGGGAGACATCCATCAGCCTCTACATTGTGGCTTTGTCTCAGACAAGGGAGGCAATACAATTAACGTTCATTGGTATACAAGGAAGCAAAATCTTCATCATATTTGGGATGACAGCATAATTGAGACAGAACTAGAAAGATTCTATGATTCTNATATGGGCGAATTCATTGATGCAATTCAACAGAATATTACGAAAGTATGGGGTGATCAAGTAGAAGAATGGGAGAACTGCAGTTCTAAGGACATCCCATGCCCAATTATATATGCAACTGAAAGTAGCGAAGATGCCTGCAAATGGGCATATAAAGATGCGTCTGAAGGTTCAGTACTAGAGGATGATTACTTCCTGTCACGTTTCCCTATTGTCAATCTGCGATTGGCTCAAGGAGGAGTTCGATTGGCTTCAACTCTGAATCATATTTTTGACACGCAGTTTGCGATGTCAATGTAATGAATAATATTTGGTGGACACCCCAATGAGTTTATACACCTAGAGAGATAAGTGATAGATTTGATAGATAATAAGATGGGACAAAAAGATAAAAATAGGAAGAGATNAGAGGTGTTAGATGGGTGNCAATAATATTGNTGTGTCCATGTATCATTANTCTAATGTAATTCATTGAATAAAGTCAATAAACTAGTTCTACAATTTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00399	126049	129139	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006308 DNA catabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0004519 endonuclease activity

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000399s00017828.1	PF02265.11	S1-P1_nuclease	43	266	1.90E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.990
SRR1783600	control	13.502
SRR1783602	moderate drought stress	9.166
SRR1811619	moderate drought stress	9.033

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.644
DRR006520	Root Summer glycyrrhizin high producing strain	4.010
DRR006521	Root Winter glycyrrhizin high producing strain	0.509
DRR006522	Root Winter glycyrrhizin high producing strain	0.639
DRR006523	Root Summer glycyrrhizin low producing strain	8.312
DRR006524	Root Summer glycyrrhizin low producing strain	8.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.261
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	143.608
SRR2868004	Drought Stress (root)	56.049
SRR2967015	Control (root)	58.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.830
SRR9715740	Leaf	0.864
SRR9715741	Leaf	3.921
SRR9715739	Root	1.405
SRR9715742	Root	3.885
SRR9715743	Root	3.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.450
SRR8749028	MeJA induced 9h	58.725
SRR8749029	MeJA induced 9h	59.176
SRR8749030	Uninduced	127.730
SRR8749031	Uninduced	86.344
SRR8749032	Uninduced	52.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	105.125
SRR8400027	Control - Root	116.987