Gene detail information of Glyur000399s00017815 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27140.1 | 3.00E-17 | HSP20-like chaperones superfamily protein |
| NR | XP_004515273.1 | 1.39E-76 | PREDICTED: uncharacterized protein LOC101488287 [Cicer arietinum] |
| COG | NP_299513.1 | 3.00E-09 | low molecular weight heat shock protein [Xylella fastidiosa 9a5c] |
| Swissprot | tr|Q9M670|RTM2_ARATH | 1.00E-15 | Protein RESTRICTED TEV MOVEMENT 2 |
| trEMBL | tr|A0A072UAS6|A0A072UAS6_MEDTR | 1.00E-74 | Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:KEH26869.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00399 | 43397 | 44589 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000399s00017815.1 | PF00011.16 | HSP20 | 24 | 111 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.206 |
| SRR1783600 | control | 2.344 |
| SRR1783602 | moderate drought stress | 1.798 |
| SRR1811619 | moderate drought stress | 1.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.504 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.125 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.688 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.802 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.977 |
| SRR2868004 | Drought Stress (root) | 18.668 |
| SRR2967015 | Control (root) | 11.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.482 |
| SRR9715740 | Leaf | 0.320 |
| SRR9715741 | Leaf | 1.303 |
| SRR9715739 | Root | 0.125 |
| SRR9715742 | Root | 3.420 |
| SRR9715743 | Root | 2.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.027 |
| SRR8400027 | Control - Root | 5.012 |