Gene detail

Gene detail information of Glyur000399s00017812

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66070.2	4.00E-45	Translation initiation factor eIF3 subunit
NR	XP_003548304.1	6.58E-112	PREDICTED: eukaryotic translation initiation factor 3 subunit J-like [Glycine max]
trEMBL	tr\|I1MQJ5\|I1MQJ5_SOYBN	2.00E-112	Eukaryotic translation initiation factor 3 subunit J {ECO:0000256\|HAMAP-Rule:MF_03009}

Sequence

Transcript Sequence

>Glyur000399s00017812.1
ATGCGATACAGTGAACGACGAGAATGCCGCCGCCAGACCAGAAGGAAGAGGCTTCATAGCAGCGGCGCGGCGAAGAAGAAGAAGAAGAAAATGCCAGAATGCTATTACTCGTCTTCTCCAAAAAAAAAATCAAAATACCCACAAACCAAAGACACAGCTTTGGATGAACCAAAATTTCATGAAAAATGGAAGATTGATGGTGTTACTTTTGACGGCAGTTTATATTCCTCGAGTGACTCACTCACCATACAAGAACCAAAATTCCATTGTGCCCTAATTCCCTCAAATCGGAAACTCGCCACCTCCACCGCCCCAATCATCGGTTACGCCGTCGTTTTGCTCACCAGTCGGTTAGCAGGAACTCTCTATTAACAAAGCGACGACCAAATGGACGACTGGGAGGATGAGCAAATTGCTCCTATTGATCTCAAATTAAAAGAGCCACCTAAAATTAACTGGGAGGATGAAGATGTNGATGAAAATGATGTGAAGGAATCATGGGAGGATGAAGACGAGCCTGCTCCGGCACCTNCAGCACCTGCTGTAAAAACTACTGAAAAGGCTCCTAAAAAATCTTCTGAAAAAGCTACTGAAAAGAAGGGAAAGAAGGTAGAACCTGTAAAGGAAGAACCACTGGATCCTGTGGCTGAAAAACTCCGCCAACAAAGACTAGTTGAAGAAGCAGATTATAAGTCCACTAAGGAATTGTTTGGTGCGGGAACCGAGGAAAAGAACCTTGATACTTTCATTCCGAAATCTGAGAGTGATTTCATGGAATATGCAGAGCTCATCTCACACAGGCTTCGTCCTTTCGAGAAAAGTTATCATTATATGGGTCTACTGAAGGCAGTAATGAGACTATCAATGACTTCTCTAAAAGGAGCAGATGCGAAAGATATCGCATCTTCCATAACTGCCATTGCGAATGAAAAGATAAAAGCAGAGAAAGAAGCCAATGCTGGTAAAAAGAAGACAGGTGGCAAGAAAAAGCAGCTTCATGTCGACAAACCTGATGAGGATTTTGTTGCTGAACCATATGATGCCTTGGATGATTATGATTTCATGTGAAAATTTTTTGGTTCAGTTCCATTCATATTCAGTGACGGGATTCAAGTGTTTCAAATATTGGAAGTTTGGGACAAGACCCTTCGGCATACCCTTGTCAAAAATNGAAGAGTGCTGTCCTGTATTTTGTCCAATAAGAGTGTGTACCAGTGTCCTCTTTTTTTTTCTTCATTGTCAATTTTGTCACCAACCATTATACTTGGAAGTTAGTCTTTAACTAGATCATTTATATAAGTTAAAAAGTTTGAAGATGAACTTGGCGACATTCAACATTACTTTTACCTTGGGGTACATTTGTGTTGTTGGATTGTAAGGATAGAATTTACATTACATTTTCCTTTCTAAAAGTTGGTCATGTCATAGTCTCATTCTTCTAGATTGAAAGTTGCAACATTTATCACCCACTGATTGTTTGAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00399	29628	35128	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000399s00017812.2	PF08597.5	eIF3_subunit	1	226	4.60E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.076
SRR1783600	control	24.319
SRR1783602	moderate drought stress	23.273
SRR1811619	moderate drought stress	23.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.686
DRR006520	Root Summer glycyrrhizin high producing strain	53.572
DRR006521	Root Winter glycyrrhizin high producing strain	48.886
DRR006522	Root Winter glycyrrhizin high producing strain	47.871
DRR006523	Root Summer glycyrrhizin low producing strain	45.480
DRR006524	Root Summer glycyrrhizin low producing strain	45.330
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.365
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.235

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	79.166
SRR2868004	Drought Stress (root)	60.630
SRR2967015	Control (root)	49.867

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.064
SRR9715740	Leaf	53.499
SRR9715741	Leaf	56.203
SRR9715739	Root	8.727
SRR9715742	Root	33.754
SRR9715743	Root	28.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.472
SRR8749028	MeJA induced 9h	32.545
SRR8749029	MeJA induced 9h	43.541
SRR8749030	Uninduced	23.313
SRR8749031	Uninduced	26.808
SRR8749032	Uninduced	24.698

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.222
SRR8400027	Control - Root	53.772