Gene detail

Gene detail information of Glyur000399s00017811

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17660.1	2.00E-15	ARF-GAP domain 15
NR	AES76518.2	2.23E-76	ADP-ribosylation factor GTPase-activating protein AGD10 [Medicago truncatula]
Swissprot	tr\|Q0WQQ1\|AGD15_ARATH	9.00E-18	Probable ADP-ribosylation factor GTPase-activating protein AGD15
trEMBL	tr\|G7KLN9\|G7KLN9_MEDTR	8.00E-77	ADP-ribosylation factor GTPase-activating protein AGD10 {ECO:0000313\|EMBL:AES76518.2}

Sequence

Transcript Sequence

>Glyur000399s00017811.1
TGGAAATCCCACGTTTCCTCCTTCTCCAACGGTTCCCCTCTCAATTTGTGGAGCCACACACACCCCAACCCAACCCAACCCAACCCACAATTGAAAATTCAAAGACCCTCTTTCAATTCCTTTCTCTCTTCGTTTGCTCCTTCCCTTCGCTGTGATACCGTGTGTCCTCCTCCTGTGGCACCACACAAGCAGCGAAGGTTTTGGTTTTTGCAAACATGAACNGGAAAGCCTCCGTCTCTAAGGAGCTTCACGCCAAACACACCAAGATCTTAGAGGGACTTCTAAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGAACAAGGCACCACGATGGGCAAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGTGGTCTTGGAGTACATATATCAAAGTTATGGGTAATGTGAAGTCAAATAAGCATTGGGAGGCAAAACTGCCACCAAATTTTGACATAAACGGATATGGAATCGAGAACTTTATTCGTGCCAAGTGGGCTTCACAAGGTGAACTGCAATCGGCATCGAAGTCAGCCGACATGATCTTTGACTTGAACGAGTTACCAGCTGCTGGTGCCAAGAGTGGTATTCAAAAAAATAGGAGACTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCNCAAGTTCGGCCTCCAGTAGCAAGATTTCATGAGGGCTCCTTAGATATACAAAAGAAGGTTTCACCACCATTAAAGAGGCCATCCACATCAGTTGATTTTGACTCNAATGGAAAGAGCAATGGCACTGTTGATCTTTTTGGCTTGCTTTCTAATCATGATGATAACCAGAATATCTCAACTTCACCTCCTGCTAGCTGGACAACATTTGATTGTAAGATGACATCACTTGTATCACATCTTCTGAGAAAGATTGTTGAGCCTTTTTGGGTAGATGTCACAAGATTACAGTCACAGAACAGTTGTAGACGTTTGTTGCGATATTGCATGAACATTGAGCAGCATTGGTCAGGTTTGAGGACTAATTTTTCAATCAGCAGAGTCTGCAGCAGGATATATATTGGGCGCCCATCTGCACCCCTTTATTCCTGCAACAACCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00399	23069	28525	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.562
SRR1783600	control	2.480
SRR1783602	moderate drought stress	2.752
SRR1811619	moderate drought stress	2.427

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.426
DRR006520	Root Summer glycyrrhizin high producing strain	2.966
DRR006521	Root Winter glycyrrhizin high producing strain	28.004
DRR006522	Root Winter glycyrrhizin high producing strain	27.972
DRR006523	Root Summer glycyrrhizin low producing strain	4.433
DRR006524	Root Summer glycyrrhizin low producing strain	4.442
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.258
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.055

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.363
SRR2868004	Drought Stress (root)	9.623
SRR2967015	Control (root)	8.842

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.906
SRR9715740	Leaf	6.508
SRR9715741	Leaf	7.314
SRR9715739	Root	0.427
SRR9715742	Root	1.335
SRR9715743	Root	1.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.389
SRR8749028	MeJA induced 9h	8.075
SRR8749029	MeJA induced 9h	7.588
SRR8749030	Uninduced	3.600
SRR8749031	Uninduced	9.834
SRR8749032	Uninduced	6.767

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.845
SRR8400027	Control - Root	3.823