Gene detail

Gene detail information of Glyur000399s00017810

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	3.00E-32	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_006599678.1	1.62E-57	PREDICTED: TMV resistance protein N-like [Glycine max]
Swissprot	tr\|Q40392\|TMVRN_NICGU	2.00E-27	TMV resistance protein N
trEMBL	tr\|K7MIV1\|K7MIV1_SOYBN	6.00E-58	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33681.2}

Sequence

Transcript Sequence

>Glyur000399s00017810.1
GTTTCCACGCTTTAATTTTAGTGTTTCTAATCTAATCTTTTTTCTTATTAAACACTAGTTAATGCTTGACTTGAGGACGATCAATCCATTGGAGTATAGTGCAGTAGCAGCAGCGAGGTGTCATTGTCATTGTCATGGCCGATCAACGATACTTCCCCTACGACGTGTTCCTCCTCACCTTATGTGGCGGCTCAGATATTCGCGACGGTGATAGTGGCCATCTCTTGGAAGCTCTCCGTGACAGGGGAATCCGCACCTTTGTTAATGAAGACAAGGAGCTACAAAGTCCCATTNTTCCCAGAGTGGACGAGATCCCTGCGGAACTTGTCATGGCAATCGAAGAGTCGAGGATTTCCATTGTCGTCTTCACTGATAACTATGACGTGTCTTCACTTCGCTTGGAAGTACTTGCCTATATCTTTGACTACTTTGGGCAGAACGATCGACTTGTTTTCCCGGTTTATTACGCGAATCGTTTTGATGCGTACCATGGGATTATAAGTCGTTGCAAGCCGTTTAATATTCCTTATTTTCTACCATCAAAATCGCGTAAGAAGTTGTTCGAGAAAGTGGAGAAAATGTCGAATGCTCTGCGTCGAGTACGTGAAATGTCCGGCTGGGATTTAGATCGGGATGTTGCAAGCAAGGTCTCTGAGATGCTTACTGGTGCTCCTTTACATGTTGCGGATTATCCAGTGGGACTTCGGTCCCGGCTGAAAGAAGTGTGCTCGCTTTTGGAGATGAGGTCGTATGATAGAGAAGTCCTCATGGTAGGGATCTATGGAGTGGCCGGTATAGGTAAATCAACACTCGCTCGAGCACTTTATAATGGGATTAGACATCGATTTAAACATTCATGTTTTCTTCACAATGTGAGAGAGAATTCAAATAAATATGGACTAGTNCACCTCCAAAATATGCTTCTTTCTGAAATAGTTCGAAAGAAAGATATTCANTTAGGAAATTCCAGTGAAGGAGTTTCAATGATAAAGCATAGGCTCCACCAACACCAAGCATTGCATAGTGTTTCTGAAGTTTCTCAGACTTCTCAAAGTATTCTTCAAGTTTCACATGCTTCTATGAAGGTTGTTGGAGTTTCATCGCATAGTTCAGAGAGTGTTTTTGAAGTTTCTCTGACATCACAAAGCGTTTTTGAAGATTCTCAAACTTCTCAGAGTGTTCATGAAGTTTTGCAGACAATTCGAGTTATGTTGCTGACTTCACGAGTTTTTCAAGCCGAGGAGATGTGTAGACTAGTTGGCCTTGTGTCAAGTGTAGTTGGCCTGTCATGTCATGCTCTGAGCCCTTCGTTCAAACGTTTAATTCGAGGGTGGAACCCTTTCAAGTTTTTTCTTTACGGGGTTTTGTCNTTGGTTATATGTGCCTCTGTATTATTTGCAAAGTCATCCTCGTTCTCCATTAAGCACAAAAACTACACATGCTTTGCGGTTTTTATGATCATCTCAGTGTACTCATTCTTGTACGACAGAGCCGTTGATGGGAAACCTGAATTACTGAGCCTGGCTTCGAATGTTGCATCTGCTTTGGCATCATTGAGCTTGTCCAAACTGGTTAAGTTTGGGTTTGAGACTGGTACATTCTGTTATTTCCTAGGTTGCTTTACGATTCAATTGTTGACCATCGACTGGAAGCTTATTTTGGTTGCCATAATCGTCGATTTTCCACTCTTTGTTATGCATTTGTCTTCGGATTCCCAACCAAAGGATGGTCATGGATCTTGGCCAAATTGGCTGATTTTGGGTTTGAGACGGCCGGTTGGGTATGATGAATTTGAGTTGGGAGAGTCCCGTAATCGTGCTCCTCCTTTACTCTTAGCGGATGAAGCAGAGCTTGTTGGAAGAACTGTGGAAGAGGTCTCTACTCTTGCTCCTTTGCATGTCTCTAATTGCTCCCCTTTACCTATTGCGGATAACACGGTCGGACTGGAGTTTCGATTGGAAGAAGTGAGCTCACTTTTGGAGCTGGGATCTGACGAAGTCCTCATGGTTGGGATCTATGGAATGGAGGNAATAGGTAAAACAACGTTAGCTCGAGCAGTTTATAACAAGATCGTAGACCAATTTGAAGGTTCGTGTTTTCTTGATAACGTGAGGGCAATTTCAAAGATGCTTGGATTACTGCACCTCCAAAATATTCTCCTTTCTCAAATAACTGGAGAGAAAGATATTCAGTTAGGAAGTGTCAATGAAGGAGTTTTAATGATACAGCATATGCTCCGCCGAAAGAAAGTTCTTTTGATCCTAGATGATGTGGACAAACTAGATCAACTAGAGGCCTTGACTTCACTGAGTGTTGTTGAAGTTTCTCAGACTTCACAGAGTGTTCCTGAAGTTTTACATACTTATATGAGGGTTGCTCAAGATATGTTGCAGAGTTCACATCGGGTTTCTGAAGTTTCTCAGAGTGTTCATNTAGTTTTGCAGACTTCTACGTGGGGTGCTCGAGTTATACCAGTGGTTGGTAATGGTGGTCCATATGTTGCCATAGACATACGTGAAGCACGTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00399	9423	21982	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000399s00017810.1	PF01582.15	TIR	29	112	1.30E-07
Glyur000399s00017810.1	PF00931.17	NB-ARC	200	295	7.40E-10
Glyur000399s00017810.1	PF00931.17	NB-ARC	608	725	1.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.470
SRR1783600	control	2.348
SRR1783602	moderate drought stress	3.736
SRR1811619	moderate drought stress	3.805

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.482
DRR006520	Root Summer glycyrrhizin high producing strain	6.805
DRR006521	Root Winter glycyrrhizin high producing strain	3.562
DRR006522	Root Winter glycyrrhizin high producing strain	3.873
DRR006523	Root Summer glycyrrhizin low producing strain	14.245
DRR006524	Root Summer glycyrrhizin low producing strain	14.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.606
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.228
SRR2868004	Drought Stress (root)	3.339
SRR2967015	Control (root)	3.754

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.518
SRR9715740	Leaf	0.736
SRR9715741	Leaf	1.887
SRR9715739	Root	6.412
SRR9715742	Root	9.761
SRR9715743	Root	9.580

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.464
SRR8749028	MeJA induced 9h	0.782
SRR8749029	MeJA induced 9h	0.296
SRR8749030	Uninduced	0.576
SRR8749031	Uninduced	0.306
SRR8749032	Uninduced	0.896

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.397
SRR8400027	Control - Root	4.110